I’m trying to build nextstrain on the latest data, using a build I tested before (and it worked great). However, now I’m getting an error in the alignment rule. This doesn’t occur using the example build however.
Here is the output of the logs/align.txt file :
/home/danesh/miniconda2/envs/nextstrain/bin/mafft: line 2719: 14699 Killed "$prefix/addsingle" -Q 100 $legacygapopt -W $tuplesize -O $outnum $addsinglearg $addarg $add2ndhalfarg -C $numthreads $memopt $weightopt $treeinopt $treeoutopt $distoutopt $seqtype $model -f "-"$gop -h $aof $param_fft $localparam $algopt $treealg $scoreoutarg < infile > /dev/null 2>> "$progressfile"
Is it because this dataset is larger than in the example or than the dataset I used before using the same build ? Although I get the same error on the cluster.
Thanks in advance !