Help and Getting Started


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About the Help and Getting Started category

Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…

2 185 June 19, 2020
How to add an annotation in entropy?
2 19 April 13, 2021
Augur Refine fails but does not generate an error log
4 21 April 12, 2021
Large memory requirements
6 135 April 10, 2021
Unsure why data is filtering out
7 78 April 8, 2021
Tree building snakemake rule failed, but iqtree successfully built?
0 17 April 5, 2021
Error in rule tree
22 144 April 5, 2021
Opening results.json file from nextclade CLI
0 26 March 31, 2021
Missing input files for rule all
1 45 March 31, 2021
Help with error in jobid: 7
1 71 March 23, 2021
Augur alignment failing - problem with mafft
6 304 March 22, 2021
Draw and color subtree using NEXUS ancestral data
4 55 March 21, 2021
Loss of country information in final auspice output
2 32 March 22, 2021
Not able to generate view only my sequences in the SVG tree
2 40 March 19, 2021
Subsampling and Data Download
2 91 March 19, 2021
Singularity Image
3 59 March 19, 2021
Is there a maximum advised tree/sample size?
1 67 March 19, 2021
Augur filter max-date error
2 40 March 18, 2021
Same data, different tree
2 59 March 15, 2021
Error in Rule Refine
6 71 March 15, 2021
Error: tree building failed
4 167 March 15, 2021
Missing part of gene in Diversity figure on Auspice.us
3 50 March 15, 2021
How to create transmission lines for divisions
6 200 March 12, 2021
Adding fifth geographical resolution?
4 78 March 8, 2021
Transmission lines based on a custom geographic unit
2 58 March 8, 2021
Error: unsupported rooting mechanisms or root not found
2 71 March 8, 2021
Using Nextstrain to understand how New Zealand should design its travel restrictions
1 52 March 8, 2021
Error with diagnostic.py
2 92 March 7, 2021
How to download this data
0 71 March 3, 2021
Adding Frequencies Panel
3 226 February 25, 2021