Help and Getting Started


Topic Replies Views Activity
About the Help and Getting Started category

Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…

2 139 June 19, 2020
How to interpret "ORF8:I121X" mutation annotation?
4 33 January 23, 2021
Error in rule align
3 21 January 22, 2021
Augur alignment failing - problem with mafft
2 52 January 21, 2021
Search by mutation?
0 18 January 14, 2021
Error: tree building failed
2 47 January 9, 2021
Error running snakemake
2 77 January 5, 2021
How to create transmission lines for divisions
2 79 December 30, 2020
Question about the "clock" view of the tree
0 78 December 15, 2020
Setting maximum sequence date
4 107 December 11, 2020
Why couldn't I open "http://localhost:4000"
1 84 December 10, 2020
Adding Frequencies Panel
1 84 December 10, 2020
Error in rule proximity_score
6 125 November 24, 2020
Snakemake Q: passing list of param values @ CLI --> one build per value
4 85 November 23, 2020
How to replicate/update previous tree
2 67 November 23, 2020
Augur error while subsampling - updated
0 63 November 21, 2020
Start whit aligment existent and newick file
0 49 November 10, 2020
AttributeError: module 'asyncio' has no attribute 'create_task'
3 192 November 10, 2020
Error in rule colours: jobid 5
7 132 November 9, 2020
Diagnosing error + filtering issues
14 316 November 9, 2020
Can we extract video from the website?
0 69 October 28, 2020
Calculating subs/year
0 59 October 14, 2020
Iqtree not using all threads
3 90 October 12, 2020
Using --existing-alignment During Augur Align
8 253 October 10, 2020
Diagnostic.py or Mask-alignment.py filtered my important sequences
0 65 October 8, 2020
Help needed for builds.yaml file
1 100 October 7, 2020
Customize Nextstrain
4 132 October 2, 2020
ERROR: All samples have been dropped! Check filter rules and metadata file format
0 114 September 21, 2020
Request for adding Bangladesh in the nextstrain available builds section
2 114 September 19, 2020
Wyoming Build Request
1 117 September 19, 2020