Help and Getting Started


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About the Help and Getting Started category

Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…

2 75 June 19, 2020
Error in rule colours: jobid 5
4 24 October 15, 2020
Calculating subs/year
0 9 October 14, 2020
Diagnosing error + filtering issues
6 49 October 14, 2020
Iqtree not using all threads
3 28 October 12, 2020
Using --existing-alignment During Augur Align
8 101 October 10, 2020
Diagnostic.py or Mask-alignment.py filtered my important sequences
0 10 October 8, 2020
Help needed for builds.yaml file
1 40 October 7, 2020
Customize Nextstrain
4 46 October 2, 2020
ERROR: All samples have been dropped! Check filter rules and metadata file format
0 36 September 21, 2020
Request for adding Bangladesh in the nextstrain available builds section
2 54 September 19, 2020
Wyoming Build Request
1 48 September 19, 2020
Problem with lat/longs
3 58 August 31, 2020
Modifying builds.yaml file
1 57 August 15, 2020
Running local samples in global background
3 93 August 3, 2020
View bootstrap trees with augur export
3 118 August 1, 2020
Valid Auspice Config Metadata
3 62 July 31, 2020
Feedback on tutorial
7 180 July 17, 2020
Error message executing new tutorial
11 122 July 16, 2020
What is meant by proximity subsampling?
2 73 July 15, 2020
Error with example analysis: configfile can't be set to a list
3 59 July 14, 2020
Exporting accessions from a prebuilt tree
2 53 July 14, 2020
Build for multiple counties?
4 124 July 13, 2020
Entropy panel data
1 153 June 30, 2020
Augur frequencies
1 100 June 30, 2020
Run basic analysis on example data
15 311 June 30, 2020
Keeping temporary files
3 89 June 29, 2020
Error msg when running a small dataset
7 148 June 27, 2020