Help and Getting Started


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About the Help and Getting Started category

Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…

2 345 June 19, 2020
Drop of Czech Republic samples & division reconstruction
0 18 November 24, 2021
Error: augur clades\ KeyError: 'muts'
2 41 November 21, 2021
Augur refine error when call --timetree \
11 99 November 19, 2021
Large, novel Spike deletions of unknown origin (not reproducible outside nextstrain framework)
1 56 November 16, 2021
Error in rule proximity_score: Fasta file appears to have sequences of different lengths!
8 58 November 14, 2021
How to set the multiple divisions data
1 35 November 14, 2021
The most basic of build help
5 72 November 11, 2021
Auspice fails to fetch frequencies and frequencies cannot be normalized
5 179 November 8, 2021
Error in rule sanitize_metadata: ncov workflow
5 59 November 7, 2021
Using Genomic Epidemiology from GISAID
1 48 November 5, 2021
Sanitize_metadata.py error: ERROR: ' ' expected after '"'
6 106 November 5, 2021
Error while generating the nextstrain for only Israel Sequences
6 77 November 3, 2021
Problem with Setup
5 107 October 29, 2021
Regarding Build for USA- Missing Data
9 96 October 27, 2021
ImportError: Cannot import name 'read_metadata' from 'augur.io'
5 82 October 26, 2021
Problems with Using sanitize.sequences.py
3 99 October 26, 2021
ModuleNotFoundError: No module named 'epiweeks'
1 55 October 26, 2021
Assistance required for adding SARS-CoV-2 build to NextStrain datasets
6 92 October 25, 2021
Pango_lineage option in Color By
2 46 October 18, 2021
Regarding Error with nextstrain - Memory Problems
3 59 October 18, 2021
Looking to contribute to nextstrain
1 77 October 13, 2021
Displaying multiple trees in a community build (segmented virus)
2 56 October 12, 2021
Display an image in a narrative
8 125 September 27, 2021
Augur filter --subsample-seed reproducible example
3 104 September 23, 2021
Frequencies Date Limited
2 58 September 23, 2021
Viewing frequencies in Auspice
4 154 September 22, 2021
Singularity Image
4 199 September 22, 2021
Help sharing tanglegram via GitHub
2 117 September 17, 2021
Understanding divergence
2 92 September 16, 2021