Help and Getting Started


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About the Help and Getting Started category

Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…

2 312 June 19, 2020
Augur filter --subsample-seed reproducible example
3 61 September 23, 2021
Display an image in a narrative
6 47 September 23, 2021
Frequencies Date Limited
2 27 September 23, 2021
Looking to contribute to nextstrain
0 16 September 23, 2021
Viewing frequencies in Auspice
4 82 September 22, 2021
Singularity Image
4 144 September 22, 2021
Help sharing tanglegram via GitHub
2 44 September 17, 2021
Understanding divergence
2 49 September 16, 2021
Using trait subcommand to infer location of unsampled nodes
2 51 September 8, 2021
Identical demes for different countries
7 106 September 8, 2021
AttributeError: ‘Clade’ object has no attribute ‘country_exposure_confidence’
1 64 September 7, 2021
Help on getting started with the nextclade CLI
3 69 September 5, 2021
How do I convert "nextclade.auspice.json" to a phylogenetic tree picture
2 64 September 3, 2021
Lat_longs.tsv country/region confusion
2 51 September 2, 2021
"nextclade dataset get" command cannot work
3 98 August 31, 2021
Augur align insertions output - clarification
4 94 August 31, 2021
Nextstrain group
2 91 August 31, 2021
Error in "main_workflow.smk" file in --latency-wait
6 216 August 28, 2021
Old json files error?
1 74 August 23, 2021
Error in Job 3: Exporting data files for for auspice
2 153 August 23, 2021
Failure when specifying multiple pango lineages in a build
5 195 August 20, 2021
Caily, clade-level phylo-trees at the country-level
3 112 August 17, 2021
The "division" column in the dataset
1 87 August 16, 2021
Label branch with spike mutations
4 126 August 14, 2021
Proximity confusion
4 266 August 12, 2021
Augur refine error: unsupported rooting mechanisms
4 107 August 12, 2021
Augur Refine Error
3 90 August 10, 2021
KeyError: 'geo_resolutions'
1 79 August 8, 2021
Error in augur refine \
2 115 August 8, 2021