Help and Getting Started


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About the Help and Getting Started category

Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…

2 319 June 19, 2020
Regarding Error with nextstrain - Memory Problems
2 13 October 15, 2021
Looking to contribute to nextstrain
1 51 October 13, 2021
Displaying multiple trees in a community build (segmented virus)
2 35 October 12, 2021
Problems with Using sanitize.sequences.py
2 52 October 5, 2021
Display an image in a narrative
8 80 September 27, 2021
Augur filter --subsample-seed reproducible example
3 81 September 23, 2021
Frequencies Date Limited
2 47 September 23, 2021
Viewing frequencies in Auspice
4 108 September 22, 2021
Singularity Image
4 171 September 22, 2021
Help sharing tanglegram via GitHub
2 69 September 17, 2021
Understanding divergence
2 67 September 16, 2021
Using trait subcommand to infer location of unsampled nodes
2 79 September 8, 2021
Identical demes for different countries
7 130 September 8, 2021
AttributeError: ‘Clade’ object has no attribute ‘country_exposure_confidence’
1 84 September 7, 2021
Help on getting started with the nextclade CLI
3 94 September 5, 2021
How do I convert "nextclade.auspice.json" to a phylogenetic tree picture
2 89 September 3, 2021
Lat_longs.tsv country/region confusion
2 71 September 2, 2021
"nextclade dataset get" command cannot work
3 111 August 31, 2021
Augur align insertions output - clarification
4 106 August 31, 2021
Nextstrain group
2 106 August 31, 2021
Error in "main_workflow.smk" file in --latency-wait
6 262 August 28, 2021
Old json files error?
1 80 August 23, 2021
Error in Job 3: Exporting data files for for auspice
2 166 August 23, 2021
Failure when specifying multiple pango lineages in a build
5 214 August 20, 2021
Caily, clade-level phylo-trees at the country-level
3 143 August 17, 2021
The "division" column in the dataset
1 100 August 16, 2021
Label branch with spike mutations
4 141 August 14, 2021
Proximity confusion
4 285 August 12, 2021
Augur refine error: unsupported rooting mechanisms
4 118 August 12, 2021