Help and Getting Started


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About the Help and Getting Started category

Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…

2 92 June 19, 2020
Error in rule proximity_score
6 62 November 24, 2020
Snakemake Q: passing list of param values @ CLI --> one build per value
4 38 November 23, 2020
How to replicate/update previous tree
2 19 November 23, 2020
Augur error while subsampling - updated
0 26 November 21, 2020
Start whit aligment existent and newick file
0 26 November 10, 2020
AttributeError: module 'asyncio' has no attribute 'create_task'
3 62 November 10, 2020
Error in rule colours: jobid 5
7 63 November 9, 2020
Diagnosing error + filtering issues
14 138 November 9, 2020
Can we extract video from the website?
0 39 October 28, 2020
How to create transmission lines for divisions
0 37 October 25, 2020
Calculating subs/year
0 39 October 14, 2020
Iqtree not using all threads
3 63 October 12, 2020
Using --existing-alignment During Augur Align
8 139 October 10, 2020
Diagnostic.py or Mask-alignment.py filtered my important sequences
0 35 October 8, 2020
Help needed for builds.yaml file
1 75 October 7, 2020
Customize Nextstrain
4 91 October 2, 2020
ERROR: All samples have been dropped! Check filter rules and metadata file format
0 70 September 21, 2020
Request for adding Bangladesh in the nextstrain available builds section
2 74 September 19, 2020
Wyoming Build Request
1 84 September 19, 2020
Problem with lat/longs
3 80 August 31, 2020
Modifying builds.yaml file
1 84 August 15, 2020
Running local samples in global background
3 118 August 3, 2020
View bootstrap trees with augur export
3 156 August 1, 2020
Valid Auspice Config Metadata
3 89 July 31, 2020
Feedback on tutorial
7 213 July 17, 2020
Error message executing new tutorial
11 271 July 16, 2020
What is meant by proximity subsampling?
2 93 July 15, 2020
Error with example analysis: configfile can't be set to a list
3 82 July 14, 2020
Exporting accessions from a prebuilt tree
2 70 July 14, 2020