Help and Getting Started


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About the Help and Getting Started category

Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…

2 227 June 19, 2020
First look at Haiti Sequences. Methodology and Interpretation
5 77 June 20, 2021
Error with augur export v2: meta data file does not exist
1 36 June 10, 2021
Recherche de séquences soumisses sur GISIAD
5 71 June 3, 2021
Define map zoom in narrative?
2 31 June 1, 2021
Error: Fasta stream
6 81 May 31, 2021
Search by mutation?
1 156 May 26, 2021
Root is not the oldest
2 79 May 25, 2021
Transmission lines for fifth (custom) geographic unit
2 61 May 20, 2021
Including ancient genomes with dates before 0
2 73 May 19, 2021
Map panel not displaying map
5 67 May 12, 2021
Is the epitope-maps branch working / available for the public?
1 45 May 10, 2021
ValeError: time data 'date_submitted' does not match format '%Y-%m-%d'
1 55 May 6, 2021
AuspiceV2 with num_date... for samples only?
1 70 April 27, 2021
KeyError in main_workflow.smk
2 75 April 27, 2021
Max-date (and min-date) -related problem
2 65 April 26, 2021
How Shannon entropy calculated per codon?
4 107 April 26, 2021
Error in Job 3: Exporting data files for for auspice
1 71 April 25, 2021
Make gap in Genomes
1 66 April 25, 2021
Change Logo in Auspice
2 83 April 23, 2021
Missing input files for rule all
4 220 April 21, 2021
How to add an annotation in entropy?
2 93 April 13, 2021
Augur Refine fails but does not generate an error log
4 89 April 12, 2021
Large memory requirements
6 251 April 10, 2021
Unsure why data is filtering out
7 188 April 8, 2021
Tree building snakemake rule failed, but iqtree successfully built?
0 93 April 5, 2021
Error in rule tree
22 261 April 5, 2021
Opening results.json file from nextclade CLI
0 77 March 31, 2021
Help with error in jobid: 7
1 153 March 23, 2021
Augur alignment failing - problem with mafft
6 443 March 22, 2021