Help and Getting Started


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About the Help and Getting Started category

Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…

2 163 June 19, 2020
Error in rule tree
1 14 February 26, 2021
Augur alignment failing - problem with mafft
5 174 February 25, 2021
Adding Frequencies Panel
3 152 February 25, 2021
How is calculate qc.overallScore in Nexclade output
3 20 February 18, 2021
GISAID account activation help - urgent
1 89 February 5, 2021
Error with diagnostic.py
1 43 February 2, 2021
Help with error in jobid: 7
0 37 January 30, 2021
Minimum specs for running nextstrain with current data
2 91 January 29, 2021
Missing S-protein Y144 deletion from B.1.1.7 lineage?
0 75 January 26, 2021
Snakemake step error
0 58 January 26, 2021
Tracking COVID mutation prevalence with world_variants_summary data?
0 77 January 25, 2021
Tinkering with the frequency panel
0 59 January 23, 2021
How to interpret "ORF8:I121X" mutation annotation?
4 84 January 23, 2021
Error in rule align
3 77 January 22, 2021
Search by mutation?
0 56 January 14, 2021
Error: tree building failed
2 88 January 9, 2021
Error running snakemake
2 144 January 5, 2021
How to create transmission lines for divisions
2 111 December 30, 2020
Question about the "clock" view of the tree
0 101 December 15, 2020
Setting maximum sequence date
4 145 December 11, 2020
Why couldn't I open "http://localhost:4000"
1 119 December 10, 2020
Error in rule proximity_score
6 197 November 24, 2020
Snakemake Q: passing list of param values @ CLI --> one build per value
4 127 November 23, 2020
How to replicate/update previous tree
2 89 November 23, 2020
Augur error while subsampling - updated
0 88 November 21, 2020
Start whit aligment existent and newick file
0 64 November 10, 2020
AttributeError: module 'asyncio' has no attribute 'create_task'
3 301 November 10, 2020
Error in rule colours: jobid 5
7 191 November 9, 2020
Diagnosing error + filtering issues
14 363 November 9, 2020