Help and Getting Started

Topic	Replies	Views	Activity
About the Help and Getting Started category Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…	2	917	June 19, 2020
Tree shows an X at the end of branches... what do they mean?	2	13	July 22, 2024
Mpox: nextstrain issue	2	23	July 20, 2024
Measles root sequence	1	8	July 19, 2024
Download and rename all builds from nextstrain.org/groups	3	18	July 18, 2024
Geography: will augur recognize correct region if the correct country is provided?	1	10	July 13, 2024
Samples have missing collection date and country info	2	130	July 10, 2024
S3 or URL links for workflow data	6	62	July 3, 2024
Ingest workflow: NCBI Datasets, Entrez, or something else?	1	54	June 28, 2024
Need help installing local instance of Nextclade web	3	119	May 21, 2024
Geo resolution had no demes	4	139	May 10, 2024
Having issues installing on macOS	1	136	May 10, 2024
Remove map background	3	160	May 3, 2024
Question about augur filter	5	274	April 23, 2024
Problem with Influenza H5N1 tanglegram	2	171	April 19, 2024
Guide to filtering GISAID data for division-specific SARS-CoV-2 builds	3	1431	April 17, 2024
Using a metadata table in the Flu build?	1	143	April 4, 2024
Error with a flu reference sequence for alignment	8	258	March 27, 2024
Error: unknown sequence format for Augur tree	2	469	March 27, 2024
Error in combining ndjson-files in mpox pipeline	4	149	March 21, 2024
Preparing data from paired-end FASTQ files	1	159	March 7, 2024
.meta.genome_annotations failed additionalProperties validation for false	3	1208	March 7, 2024
How Shannon entropy calculated per codon?	5	812	February 29, 2024
Nexststrain RSV FullGenome clades	4	264	February 14, 2024
Yamagata fluB HA1 amino acid in the 'Genotype' or 'Color By' selections	3	131	February 14, 2024
How to add years on x-axis using nextclade	2	294	February 11, 2024
How to show years on x-axis using nextclade	1	168	February 11, 2024
{"E": {"end": 26472, "seqid": "data/genemap.gff"…} failed required validation for ["nuc"]	2	130	February 3, 2024
Nextstrain group	2	421	August 31, 2021
Windows 10 won't install Nextclade CLI	6	530	January 20, 2024

About the Help and Getting Started category

Whether you’re just getting started or a seasoned expert, this is the place to troubleshoot problems, debug workflows, and puzzle over analyses. If you need or can offer help with Nextstrain, make a new topic in this cat…