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Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

8 1652 June 2, 2021
Augur.io not found
Help and Getting Started
0 7 January 21, 2022
Narrative making
Help and Getting Started
4 66 January 21, 2022
Tree building failed
0 14 January 20, 2022
GISAID download augur input
0 15 January 20, 2022
Using existing alignment
Help and Getting Started
3 27 January 20, 2022
Validation of results/default-build/ncov_with_accessions.json failed
Help and Getting Started
1 34 January 20, 2022
Error in rule "align"
Help and Getting Started
3 47 January 19, 2022
Changing default reference
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1 20 January 19, 2022
Error when running sanitize_sequences.py on whole GISAID dump
Help and Getting Started
0 23 January 19, 2022
Select SARS-COV-2 sequence with alpha, beta, gamma, delta mutations
6 298 January 18, 2022
Where did the Omicron data go?
Site Feedback
3 84 January 18, 2022
Making description.md
0 27 January 18, 2022
Error in Rule Refine when run ncov
Help and Getting Started
2 50 January 17, 2022
Subsampling sequences genetically related to a focal sample
Help and Getting Started
0 23 January 14, 2022
Quick note on configuring tip colouring in auspice
General
0 36 January 6, 2022
Sharing build profile
General
2 53 January 4, 2022
What is logistic gowth and fequency
General
0 43 December 30, 2021
Help with Build
Help and Getting Started
2 67 December 24, 2021
Large, novel Spike deletions of unknown origin (not reproducible outside nextstrain framework)
Help and Getting Started
3 165 December 23, 2021
Augur trait error
2 71 December 22, 2021
How to pass an sequence index into a build?
Help and Getting Started
2 44 December 21, 2021
Drop of Czech Republic samples & division reconstruction
Help and Getting Started
1 68 December 20, 2021
Augur filter data
General
1 73 December 20, 2021
Masking Question
Help and Getting Started
1 56 December 20, 2021
SARS-CoV-2 tutorial Docker default issue
Help and Getting Started
1 52 December 17, 2021
Followed data prep instructions, nextstrain fails
Help and Getting Started
20 102 December 16, 2021
Augur frequencies error: RuntimeError: `nodes` value in results/_tip_frequencies.json is not a dictionary. Please check the formatting of this JSON!
General
7 258 December 16, 2021
Nextclade CLI clade calls different from Nextclade Web calls
General
3 70 December 10, 2021
Build with newest nextstrain/ncov has API requests to mapbox 403:Forbidden
General
11 876 December 10, 2021