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Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

8 1334 June 2, 2021
Auspice shortcuts and functionalities
2 17 September 25, 2021
Problem with iqtree
1 47 September 23, 2021
Augur filter --subsample-seed reproducible example
Help and Getting Started
3 62 September 23, 2021
Display an image in a narrative
Help and Getting Started
6 47 September 23, 2021
Frequencies Date Limited
Help and Getting Started
2 27 September 23, 2021
Looking to contribute to nextstrain
Help and Getting Started
0 16 September 23, 2021
Color clade of phylogenetic tree
General
1 29 September 22, 2021
Circles on the map
General
6 76 September 22, 2021
Wildcard in subsampling scheme
General
3 19 September 22, 2021
Viewing frequencies in Auspice
Help and Getting Started
4 82 September 22, 2021
Singularity Image
Help and Getting Started
4 144 September 22, 2021
Adding logos along the description of a build
4 55 September 21, 2021
Augur frequencies error: RuntimeError: `nodes` value in results/_tip_frequencies.json is not a dictionary. Please check the formatting of this JSON!
General
3 75 September 20, 2021
Error in "main_workflow.smk" file
General
3 103 September 20, 2021
Nextstrain registration
1 28 September 20, 2021
Help sharing tanglegram via GitHub
Help and Getting Started
2 44 September 17, 2021
Understanding divergence
Help and Getting Started
2 49 September 16, 2021
Masking of position 21987 in SARS-CoV-2 builds
General
1 67 September 16, 2021
Emerging lineages
General
6 155 September 2, 2021
Add filter for Pangolin strains
6 83 September 10, 2021
Help! A question about npm
6 91 September 10, 2021
Using trait subcommand to infer location of unsampled nodes
Help and Getting Started
2 51 September 8, 2021
Identical demes for different countries
Help and Getting Started
7 106 September 8, 2021
Latitude and longitude file
General
1 59 September 7, 2021
AttributeError: ‘Clade’ object has no attribute ‘country_exposure_confidence’
Help and Getting Started
1 64 September 7, 2021
Help on getting started with the nextclade CLI
Help and Getting Started
3 69 September 5, 2021
Ncov git pull update
General
2 88 September 5, 2021
How do I convert "nextclade.auspice.json" to a phylogenetic tree picture
Help and Getting Started
2 64 September 3, 2021
Lat_longs.tsv country/region confusion
Help and Getting Started
2 51 September 2, 2021