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Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

6 735 February 2, 2021
Error in rule tree
Help and Getting Started
1 14 February 26, 2021
Auspice doesn't install correctly
General
4 55 February 26, 2021
Help needed to bulid Pylogenetic analysis for viruses
0 9 February 25, 2021
Augur alignment failing - problem with mafft
Help and Getting Started
5 174 February 25, 2021
Adding Frequencies Panel
Help and Getting Started
3 152 February 25, 2021
Augur translate - gaps
General
1 19 February 23, 2021
Tuberculosis data
Site Feedback
1 18 February 23, 2021
Nextalign + Snakemake
3 50 February 23, 2021
Sampling of influenza sequences
1 22 February 23, 2021
How to look at data from each country?
4 215 February 23, 2021
Nextmeta and nextfasta not on GISAID
23 492 February 18, 2021
How is calculate qc.overallScore in Nexclade output
Help and Getting Started
3 21 February 18, 2021
Digging into the ½ million sequences with javascript + filtering + dynamic nextstrain tree
0 23 February 17, 2021
Does auspice 2.23.0 validate the nexus file?
2 34 February 16, 2021
Trait location were not specified
1 17 February 15, 2021
300 or more distinct discrete states found in ancestral reconstruction
0 27 February 11, 2021
Nextstrain build of 346 Sarbecoviruses partial rdrp
General
0 31 February 8, 2021
Map NextStrain names to others?
General
2 127 February 5, 2021
GISAID account activation help - urgent
Help and Getting Started
1 89 February 5, 2021
What is the meaning of "building DAG of jobs"?
4 146 February 4, 2021
3 simple questions that I could not find answers on NextStrain
0 86 February 3, 2021
Error with diagnostic.py
Help and Getting Started
1 43 February 2, 2021
Does NextStrain recognize emerging clade 20B/S.484K
0 75 February 2, 2021
Trouble identifying mutations in clade definitions (20J/501Y.V3)
General
0 71 February 2, 2021
Too high divergence
3 127 February 1, 2021
ERROR: Problem reading in data/example_sequences.fasta: Duplicate key '2019-nCoV'
0 32 February 1, 2021
Help with error in jobid: 7
Help and Getting Started
0 37 January 30, 2021
Minimum specs for running nextstrain with current data
Help and Getting Started
2 91 January 29, 2021
Filtering multiple tips on Auspice at once using queries as CSV
General
0 35 January 29, 2021