Topic Replies Views Activity
Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

4 294 September 11, 2020
Only global build found in ./auspice
General
0 14 October 16, 2020
Error in rule colours: jobid 5
Help and Getting Started
4 25 October 15, 2020
How to find the synonymous and nonsynonymous mutations?
0 15 October 14, 2020
Error with augur filter after latest git pull
General
7 33 October 14, 2020
Calculating subs/year
Help and Getting Started
0 10 October 14, 2020
Diagnosing error + filtering issues
Help and Getting Started
6 49 October 14, 2020
Iqtree not using all threads
Help and Getting Started
3 29 October 12, 2020
Using --existing-alignment During Augur Align
Help and Getting Started
8 101 October 10, 2020
Diagnostic.py or Mask-alignment.py filtered my important sequences
Help and Getting Started
0 11 October 8, 2020
Help needed for builds.yaml file
Help and Getting Started
1 41 October 7, 2020
Customize Nextstrain
Help and Getting Started
4 46 October 2, 2020
What is entropy in the https://nextstrain.org/ncov/global link?
General
1 32 September 30, 2020
What is the algorithm to assign dates to a phylogenetic tree of SARS-CoV-2?
General
1 38 September 29, 2020
Feedback on some default exclusions for nCoV workflow
General
1 38 September 25, 2020
ERROR: All samples have been dropped! Check filter rules and metadata file format
Help and Getting Started
0 36 September 21, 2020
Selected Sample - Transmission lines
General
1 38 September 21, 2020
Request for adding Bangladesh in the nextstrain available builds section
Help and Getting Started
2 55 September 19, 2020
Wyoming Build Request
Help and Getting Started
1 48 September 19, 2020
SARS-CoV-2 Mutation Data
General
3 352 September 4, 2020
Using travel information (country_exposure)
2 51 September 2, 2020
Problem with lat/longs
Help and Getting Started
3 58 August 31, 2020
Galaxy Integration
General
1 47 August 25, 2020
Make reproducible workflows with conda environments and pinned augur versions
General
0 50 August 25, 2020
Mugration weights
General
3 80 August 22, 2020
Best practices for reporting workplace outbreaks/super spreading event data
General
6 86 August 22, 2020
Customizing colors per division/location
1 57 August 15, 2020
Modifying builds.yaml file
Help and Getting Started
1 58 August 15, 2020
Data privacy when viewing local and public builds
General
2 78 August 7, 2020
Running local samples in global background
Help and Getting Started
3 93 August 3, 2020