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Guide to filtering GISAID data for division-specific SARS-CoV-2 builds
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Background One common use case for SARS-CoV-2 analyses is to create a phylogeny focused on a specific place and time with contextual sequences that are genetically related to sequences in the focal region. Although it’s…

1 422 March 31, 2022
Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

9 3127 August 16, 2022
How to find my result by auspice
8 48 September 22, 2022
Build with newest nextstrain/ncov has API requests to mapbox 403:Forbidden
General
13 1492 September 22, 2022
Captions overlap due to "Color by" parameter
General
2 33 September 21, 2022
Is it possible to prevent translation when using genemap?
General
1 45 September 20, 2022
Is there any way to locally view the result like clades.nextstrain.org?
Help and Getting Started
8 78 September 20, 2022
Can quality control other poxvirus genomes？
1 16 September 20, 2022
Monkeypox: Divergence units in number of mutations
1 63 September 12, 2022
Where can I look up clade defining mutations for seasonal flu?
Help and Getting Started
0 38 August 31, 2022
Obtain numerical values on the transmission between countries
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3 62 September 6, 2022
Subsample different datasets
2 41 September 1, 2022
How to visualize result
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1 46 September 1, 2022
Error: Alignment must have at least 3 sequences
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3 253 August 31, 2022
Downloaded SVG has different fonts
General
2 62 August 22, 2022
Windows 10 won't install Nextclade CLI
Help and Getting Started
2 61 August 19, 2022
MPXV Nextclade Settings
General
0 57 August 16, 2022
File traitsdivision.mugration_model
General
2 77 August 12, 2022
Determining mutation frequency?
4 386 August 9, 2022
How to deal with samples with way too many mutations
General
2 232 August 5, 2022
Increase weight or colors of transmission lines
Help and Getting Started
1 82 August 4, 2022
Getting node support values in the ncov workflow
Help and Getting Started
2 84 August 4, 2022
How to change the X-axis units for Divergence
1 98 August 1, 2022
Export transmission lines
General
5 229 August 1, 2022
Ref Seqs for VOCs (especially 5'UTRs)
General
3 79 July 29, 2022
GISAID database
7 159 July 29, 2022
Nextclade cli newbie error (windows): Found argument '--input-dataset' which wasn't expected
Help and Getting Started
1 86 July 28, 2022
How to specify what metadata is shown in sample details
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2 70 July 27, 2022
Bootstrap values not apppearing in refined tree
General
0 73 July 27, 2022
Unable to view data on auspice
Help and Getting Started
4 115 July 26, 2022