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Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

8 1048 June 2, 2021
First look at Haiti Sequences. Methodology and Interpretation
Help and Getting Started
5 77 June 20, 2021
Create nextstrain
1 16 June 18, 2021
Unsupporting rooting mechanisms or root not found
2 34 June 15, 2021
Regarding Extracting Nucleotide Mutations
General
6 122 June 14, 2021
New strain category - Herpes simplex virus
Site Feedback
1 33 June 10, 2021
Date confidence, ORF1a of Sarbecovirus, 104 genomes
2 52 June 10, 2021
Error with augur export v2: meta data file does not exist
Help and Getting Started
1 36 June 10, 2021
Recherche de séquences soumisses sur GISIAD
Help and Getting Started
5 72 June 3, 2021
Define map zoom in narrative?
Help and Getting Started
2 32 June 1, 2021
SARS-CoV-2 conserved genomic segments
General
0 32 June 1, 2021
Error: Fasta stream
Help and Getting Started
6 81 May 31, 2021
Nextmeta and nextfasta not on GISAID
33 1073 May 30, 2021
Why nextstrain does not have a bootstrap option in the tree building step?
General
0 49 May 27, 2021
Search by mutation?
Help and Getting Started
1 156 May 26, 2021
Root is not the oldest
Help and Getting Started
2 80 May 25, 2021
SARS-CoV-2 Mutation Data
General
4 899 May 25, 2021
Tutorial, different instructions
1 51 May 24, 2021
Transmission lines for fifth (custom) geographic unit
Help and Getting Started
2 61 May 20, 2021
Including ancient genomes with dates before 0
Help and Getting Started
2 73 May 19, 2021
1 fundamental (maybe naive) question on nextStrain
1 51 May 19, 2021
Nextalign | Error: Invalid nucleotide: "L"
1 50 May 18, 2021
H7 hemmaglutinin phylogeny showing FCS
General
2 46 May 12, 2021
Map panel not displaying map
Help and Getting Started
5 68 May 12, 2021
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 466: invalid start byte
General
3 124 May 11, 2021
Setting up context sequence set
General
1 60 May 10, 2021
Is the epitope-maps branch working / available for the public?
Help and Getting Started
1 45 May 10, 2021
ValeError: time data 'date_submitted' does not match format '%Y-%m-%d'
Help and Getting Started
1 55 May 6, 2021
Snakefile not found
6 115 May 3, 2021
Using logistic_growth to identify a more transmissible/fit lineage?
General
4 148 April 28, 2021