Nextstrain Discussion

Topic	Replies	Views	Activity
Welcome to discussion.nextstrain.org! General This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…	4	402	September 11, 2020
One of the European countries build is dating the root in 1961 General	1	20	November 28, 2020
How to look at data from each country?	1	69	November 24, 2020
Error in rule proximity_score Help and Getting Started	6	62	November 24, 2020
Snakemake Q: passing list of param values @ CLI --> one build per value Help and Getting Started	4	38	November 23, 2020
How to replicate/update previous tree Help and Getting Started	2	19	November 23, 2020
Augur error while subsampling - updated Help and Getting Started	0	27	November 21, 2020
Augur_recursion_limit General	1	26	November 20, 2020
Where to find the meaning of the following augur commands?	1	14	November 20, 2020
Local installation of Augur and Auspice with conda	0	13	November 19, 2020
What is the meaning of "building DAG of jobs"?	1	16	November 19, 2020
Start whit aligment existent and newick file Help and Getting Started	0	26	November 10, 2020
AttributeError: module 'asyncio' has no attribute 'create_task' Help and Getting Started	3	64	November 10, 2020
Make mafft's --nomemsave optional General	2	43	November 9, 2020
Error in rule colours: jobid 5 Help and Getting Started	7	63	November 9, 2020
Diagnosing error + filtering issues Help and Getting Started	14	138	November 9, 2020
Pruning leaf --clock-filter-iqd General	2	44	November 7, 2020
Can we extract video from the website? Help and Getting Started	0	39	October 28, 2020
Strain in Spain from December General	0	93	October 26, 2020
For understanding Genome-Sequence Tracing Sars-Cov-2 Site Feedback	0	66	October 25, 2020
How to create transmission lines for divisions Help and Getting Started	0	38	October 25, 2020
Only global build found in ./auspice General	4	53	October 23, 2020
How to find the synonymous and nonsynonymous mutations?	0	49	October 14, 2020
Error with augur filter after latest git pull General	7	84	October 14, 2020
Calculating subs/year Help and Getting Started	0	39	October 14, 2020
Iqtree not using all threads Help and Getting Started	3	63	October 12, 2020
Using --existing-alignment During Augur Align Help and Getting Started	8	139	October 10, 2020
Diagnostic.py or Mask-alignment.py filtered my important sequences Help and Getting Started	0	35	October 8, 2020
Help needed for builds.yaml file Help and Getting Started	1	75	October 7, 2020
Customize Nextstrain Help and Getting Started	4	91	October 2, 2020

Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…