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Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

8 1169 June 2, 2021
Struggling to get the map displayed
Help and Getting Started
8 45 August 1, 2021
Proximity confusion
Help and Getting Started
0 66 July 29, 2021
Auspice will not collect datasets and narratives from the run location
10 79 July 29, 2021
Zika-tutorial, NO /snp/bin/docker
4 65 July 27, 2021
Auspice fails to fetch frequencies and frequencies cannot be normalized
Help and Getting Started
2 36 July 27, 2021
Select SARS-COV-2 sequence with alpha, beta, gamma, delta mutations
3 80 July 26, 2021
Iterative use of nextstrain or parameters tuning
Help and Getting Started
1 43 July 26, 2021
Individual strain tracking
0 27 July 26, 2021
Curate data from the full GISAID database
Help and Getting Started
3 73 July 23, 2021
Error in "main_workflow.smk" file in --latency-wait
Help and Getting Started
5 78 July 23, 2021
Installation Issue
Help and Getting Started
4 50 July 23, 2021
Tip frequencies loading error
Help and Getting Started
5 38 July 23, 2021
Error in augur refine \
Help and Getting Started
1 56 July 18, 2021
Including ancient genomes with dates before 0
Help and Getting Started
8 139 July 15, 2021
Is it possible to supply multiple inputs as a list of strain names?
2 46 July 14, 2021
The 'conda' command is not available in the shell /bin/bash that will be used by Snakemake
1 34 July 14, 2021
Error in augur for Nextstrain installation in MmacOS High Sierra v10.13.6
2 60 July 14, 2021
How to set the parameter for augur LBI?
Help and Getting Started
2 50 July 13, 2021
Recherche de séquences soumisses sur GISIAD
Help and Getting Started
8 154 July 12, 2021
Error in rule align- sequence length
Help and Getting Started
9 100 July 12, 2021
Tree rooting too early
Help and Getting Started
4 67 July 12, 2021
augur lbi CalledProcessError: returned non-zero exit status 1
Help and Getting Started
3 65 July 12, 2021
Map panel not displaying map
Help and Getting Started
6 109 July 9, 2021
Build with newest nextstrain/ncov has API requests to mapbox 403:Forbidden
General
10 346 July 9, 2021
Adding Frequencies Panel
Help and Getting Started
4 379 July 8, 2021
Error: Alignment must have at least 3 sequences
Help and Getting Started
0 52 July 7, 2021
Error message upon running analysis
Help and Getting Started
0 74 July 6, 2021
How to download this data
Help and Getting Started
1 146 July 6, 2021
Nextmeta and nextfasta not on GISAID
34 1236 June 30, 2021