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Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

7 940 March 16, 2021
Regarding Extracting Nucleotide Mutations
General
5 59 May 7, 2021
ValeError: time data 'date_submitted' does not match format '%Y-%m-%d'
Help and Getting Started
1 16 May 6, 2021
Snakefile not found
6 51 May 3, 2021
Including ancient genomes with dates before 0
Help and Getting Started
1 24 May 2, 2021
Using logistic_growth to identify a more transmissible/fit lineage?
General
4 79 April 28, 2021
AuspiceV2 with num_date... for samples only?
Help and Getting Started
1 33 April 27, 2021
How to download variant data?
General
1 48 April 27, 2021
KeyError in main_workflow.smk
Help and Getting Started
2 37 April 27, 2021
Max-date (and min-date) -related problem
Help and Getting Started
2 31 April 26, 2021
How Shannon entropy calculated per codon?
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4 66 April 26, 2021
Error in Job 3: Exporting data files for for auspice
Help and Getting Started
1 48 April 25, 2021
Make gap in Genomes
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1 36 April 25, 2021
Change Logo in Auspice
Help and Getting Started
2 51 April 23, 2021
Missing input files for rule all
Help and Getting Started
4 120 April 21, 2021
Nextmeta and nextfasta not on GISAID
28 864 April 19, 2021
Identify a SARS-CoV2 strain
2 116 April 14, 2021
Frequency plot smoothing
3 73 April 14, 2021
How to add an annotation in entropy?
Help and Getting Started
2 56 April 13, 2021
Augur Refine fails but does not generate an error log
Help and Getting Started
4 62 April 12, 2021
Large memory requirements
Help and Getting Started
6 193 April 10, 2021
How to use the Nextstrain Group feature to share results
General
1 41 April 8, 2021
Unsure why data is filtering out
Help and Getting Started
7 108 April 8, 2021
Tree building snakemake rule failed, but iqtree successfully built?
Help and Getting Started
0 43 April 5, 2021
Error in augur,
1 61 April 5, 2021
Error in rule tree
Help and Getting Started
22 187 April 5, 2021
Opening results.json file from nextclade CLI
Help and Getting Started
0 46 March 31, 2021
Intervals in frequency panels
3 65 March 31, 2021
Obtain auspice phylogenetic tree in journal format
2 51 March 31, 2021
Artifactual genomes/nodes
4 72 March 29, 2021