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Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

7 854 March 16, 2021
Identify a SARS-CoV2 strain
2 44 April 14, 2021
Frequency plot smoothing
3 35 April 14, 2021
How to add an annotation in entropy?
Help and Getting Started
2 19 April 13, 2021
Augur Refine fails but does not generate an error log
Help and Getting Started
4 21 April 12, 2021
Large memory requirements
Help and Getting Started
6 135 April 10, 2021
How to use the Nextstrain Group feature to share results
General
1 12 April 8, 2021
Unsure why data is filtering out
Help and Getting Started
7 79 April 8, 2021
Nextmeta and nextfasta not on GISAID
27 713 April 6, 2021
Tree building snakemake rule failed, but iqtree successfully built?
Help and Getting Started
0 17 April 5, 2021
Error in augur,
1 30 April 5, 2021
Error in rule tree
Help and Getting Started
22 144 April 5, 2021
Opening results.json file from nextclade CLI
Help and Getting Started
0 27 March 31, 2021
Intervals in frequency panels
3 42 March 31, 2021
Missing input files for rule all
Help and Getting Started
1 46 March 31, 2021
Obtain auspice phylogenetic tree in journal format
2 29 March 31, 2021
Artifactual genomes/nodes
4 46 March 29, 2021
Narratives Link Setup
General
2 43 March 24, 2021
All samples dropped during augur filter
18 129 March 23, 2021
Help with error in jobid: 7
Help and Getting Started
1 71 March 23, 2021
Extract nt and AA mutation info per branch from JSON after augur ancestral/translate/export
General
6 65 March 22, 2021
Augur alignment failing - problem with mafft
Help and Getting Started
6 306 March 22, 2021
Avoiding large memory requirements by switching to `nextalign`
General
0 76 March 22, 2021
Draw and color subtree using NEXUS ancestral data
Help and Getting Started
4 56 March 21, 2021
Loss of country information in final auspice output
Help and Getting Started
2 33 March 22, 2021
Deciding on thresholds for calling consensus sequence
2 51 March 21, 2021
Auspice view: metadata, drop reference strains, combine multiple trees
General
3 54 March 20, 2021
Not able to generate view only my sequences in the SVG tree
Help and Getting Started
2 40 March 19, 2021
Subsampling and Data Download
Help and Getting Started
2 91 March 19, 2021
Singularity Image
Help and Getting Started
3 60 March 19, 2021