Nextstrain Discussion

Topic	Replies	Views	Activity
Welcome to discussion.nextstrain.org! General This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…	11	5661	November 26, 2023
Visualization of JSON tree created by Next strain Workflow General	2	56	December 2, 2023
Auspice tanglegrams with more than 2 trees? Help and Getting Started	2	27	December 1, 2023
Is Auspice hover-over information display configurable? General	5	82	November 19, 2023
Displaying trees from NCBI Pathogen Browser in auspice.us	7	160	November 16, 2023
Augur traits values null	2	69	November 16, 2023
Windows 10 won't install Nextclade CLI Help and Getting Started	5	330	November 14, 2023
NextClade Variant Calling info General	4	262	November 8, 2023
Subsampling Local DENV dataset based on genetic similarity Help and Getting Started	0	63	November 6, 2023
How to viz flu vaccine strain as the nextstrain seasonal flu page Help and Getting Started	0	69	November 5, 2023
ERROR: 300 or more distinct discrete states found Help and Getting Started	0	81	November 1, 2023
Fixing the clock rate when refining an H3N2 phylogenetic tree? Help and Getting Started	0	84	October 28, 2023
Does the rate estimate include a 95% confidence interval? Help and Getting Started	0	101	October 26, 2023
Analysing only Spike gene sequences from SARS-CoV-2	0	85	October 25, 2023
Augur TreeTime error Help and Getting Started	6	123	October 12, 2023
Extracting discrete transition states General	1	137	October 5, 2023
21L(Omicron, BA.2) showing up as B.1.1.529 General	1	143	October 5, 2023
How to use Nextstrain seasonal flu graph as reference tree for Nextclade? Help and Getting Started	1	132	October 5, 2023
Change substitution model in SARS-CoV-2 workflow? Help and Getting Started	4	143	October 5, 2023
Request for comments: how do you subsample your data? General	2	157	October 5, 2023
Repeated runs of the same data will give different results	6	307	September 4, 2023
How to export trees viewed in auspice as images?	9	208	September 1, 2023
Displaying a Map in Auspice Help and Getting Started	2	169	August 22, 2023
Clade Labeling forces AA Mut-file although stated otherwise Help and Getting Started	2	154	August 21, 2023
Pandas error during augur filter: 'NoneType' object has no attribute 'str'	8	260	August 16, 2023
Clade difference between influenza HA references Help and Getting Started	1	230	August 10, 2023
Error message when running Zika tutorial workflow Help and Getting Started	9	310	July 17, 2023
SARS-CoV-2 E484K mutation and del 69-70 deletion General	7	289	July 18, 2023
The Dataset column to display on the Auspice	9	279	July 17, 2023
Refine: Midpoint rooting without timetree?	2	178	July 16, 2023

Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…