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Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

8 1457 June 2, 2021
Questions about new strain 21k
0 26 November 26, 2021
Augur trait error
0 13 November 25, 2021
Drop of Czech Republic samples & division reconstruction
Help and Getting Started
0 19 November 24, 2021
Biopython Deprecation Warning
1 38 November 23, 2021
Code failure while running a build for USA
1 22 November 23, 2021
Color of frequency plot
1 22 November 21, 2021
Error: augur clades\ KeyError: 'muts'
Help and Getting Started
2 42 November 21, 2021
Run_pangolin and tree root issues - incomprehensible errors
0 20 November 20, 2021
Augur frequencies error: RuntimeError: `nodes` value in results/_tip_frequencies.json is not a dictionary. Please check the formatting of this JSON!
General
6 197 November 19, 2021
Nextstrain / Github LFS hosting / Bandwidth Issues
2 38 November 19, 2021
Author or lab information for a build
General
0 27 November 19, 2021
Augur refine error when call --timetree \
Help and Getting Started
11 99 November 19, 2021
Large, novel Spike deletions of unknown origin (not reproducible outside nextstrain framework)
Help and Getting Started
1 57 November 16, 2021
Question about how a branch is made
0 33 November 16, 2021
How to parse node data JSONs from the ncov workflow (or any Nextstrain workflow)
General
0 39 November 15, 2021
Error in rule proximity_score: Fasta file appears to have sequences of different lengths!
Help and Getting Started
8 58 November 14, 2021
How to set the multiple divisions data
Help and Getting Started
1 35 November 14, 2021
H7 hemmaglutinin phylogeny showing FCS
General
4 149 November 13, 2021
Error in displaying "emerging lineage"
2 43 November 12, 2021
The most basic of build help
Help and Getting Started
5 72 November 11, 2021
Problems with Color-By Admin Division
1 31 November 8, 2021
Auspice fails to fetch frequencies and frequencies cannot be normalized
Help and Getting Started
5 179 November 8, 2021
Error in rule sanitize_metadata: ncov workflow
Help and Getting Started
5 59 November 7, 2021
Using Genomic Epidemiology from GISAID
Help and Getting Started
1 48 November 5, 2021
Sanitize_metadata.py error: ERROR: ' ' expected after '"'
Help and Getting Started
6 107 November 5, 2021
Error while generating the nextstrain for only Israel Sequences
Help and Getting Started
6 77 November 3, 2021
Error in "main_workflow.smk" file
General
9 288 October 29, 2021
Problem with Setup
Help and Getting Started
5 108 October 29, 2021
Augur refine trims half of my sequences
2 64 October 28, 2021