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Welcome to discussion.nextstrain.org!
General

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

5 600 January 14, 2021
How to interpret "ORF8:I121X" mutation annotation?
Help and Getting Started
3 20 January 17, 2021
How do indices "gisaid_epi_isl" and "genbank_accession" used in the nextstrain pipeline?
0 10 January 15, 2021
Search by mutation?
Help and Getting Started
0 7 January 14, 2021
What is the meaning of "alt" in the file clades.tsv?
1 21 January 14, 2021
Too high divergence
0 25 January 13, 2021
Nextmeta and nextfasta not on GISAID
20 226 January 13, 2021
How can a community build be added to the SARS-CoV-2 portal?
General
1 38 January 11, 2021
Error: tree building failed
Help and Getting Started
2 38 January 9, 2021
"snakemake --cores 1 --profile ../south-usa-sarscov2/profiles/south-central/" does not work
4 31 January 8, 2021
TypeError: argument of type 'NoneType' is not iterable
2 22 January 6, 2021
What is the purpose of "subsampling" in the workflow?
0 19 January 6, 2021
Separate subsampling procedure
General
0 22 January 5, 2021
Error running snakemake
Help and Getting Started
2 68 January 5, 2021
Extracting geo-location from lab annotation
General
5 51 December 30, 2020
Show Transmission Lines for Location-Level Geographical Resolution
General
0 39 December 30, 2020
How to create transmission lines for divisions
Help and Getting Started
2 73 December 30, 2020
Input Function Exception KeyError: 'location'
1 28 December 30, 2020
Map NextStrain names to others?
General
0 41 December 30, 2020
Augur alignment failing - problem with mafft
Help and Getting Started
0 33 December 28, 2020
Make reproducible workflows with conda environments and pinned augur versions
General
0 132 August 25, 2020
Question about the "clock" view of the tree
Help and Getting Started
0 72 December 15, 2020
GISAID nextfasta QC criteria
General
7 330 December 15, 2020
Setting maximum sequence date
Help and Getting Started
4 99 December 11, 2020
Pruning leaf --clock-filter-iqd
General
3 104 December 10, 2020
Modifying workflow to use pre-existing alignment
2 59 December 10, 2020
Why couldn't I open "http://localhost:4000"
Help and Getting Started
1 76 December 10, 2020
What is entropy in the https://nextstrain.org/ncov/global link?
General
3 200 December 10, 2020
Adding Frequencies Panel
Help and Getting Started
1 73 December 10, 2020
Accumulated cost in using nextstrain
General
0 67 December 6, 2020