Hi! I try to mask three sites to avoid branch splitting due to it.
But I still see the branch with such mutations
That I have done:
Add to builds.yaml
mask_sites: “sites numbers by space”
Add this sites to defaults/sites_ignored_for_tree_topology.txt file
Maybe it is important that two of these three mutations was in sites_ignored_for_tree_topology.txt previously by default
I will be glad to hear some reasons for existence of them on result tree. Thanks!