Biopython Deprecation Warning

1

Was building a tree today and received the following error during the --augur tree phase. I’ve tried running it locally and from Docker and uninstalled and reinstalled locally and on Docker and the same error message pops up.

/Users/gvestal/opt/miniconda3/envs/nextstrain/lib/python3.7/site-packages/Bio/Seq.py:1756: BiopythonDeprecationWarning: myseq.tomutable() is deprecated; please use MutableSeq(myseq) instead.
BiopythonDeprecationWarning,

Is this something that has to be adjusted somewhere in the code? Or is is an error from my end of things? Thanks.

2

Hi @gvestal! This is an issue in Augur that we need to fix and probably not on your end (unless you have custom code that calls tomutable on sequences). Thank you for calling it to our attention!