General


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Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

6 735 February 2, 2021
About the General category

This category is for general discussion about anything and everything Nextstrain. Make a new topic in this category to: Describe how you’re currently using Nextstrain, so everyone can see awesome examples of genomic …

2 130 June 19, 2020
Auspice doesn't install correctly
4 55 February 26, 2021
Augur translate - gaps
1 18 February 23, 2021
Nextstrain build of 346 Sarbecoviruses partial rdrp
0 31 February 8, 2021
Map NextStrain names to others?
2 127 February 5, 2021
Trouble identifying mutations in clade definitions (20J/501Y.V3)
0 70 February 2, 2021
Filtering multiple tips on Auspice at once using queries as CSV
0 35 January 29, 2021
Pruning leaf --clock-filter-iqd
4 174 January 23, 2021
Rule align & deletions in coding regions
3 64 January 23, 2021
How can a community build be added to the SARS-CoV-2 portal?
1 76 January 11, 2021
Separate subsampling procedure
0 46 January 5, 2021
Extracting geo-location from lab annotation
5 95 December 30, 2020
Show Transmission Lines for Location-Level Geographical Resolution
0 68 December 30, 2020
Make reproducible workflows with conda environments and pinned augur versions
0 168 August 25, 2020
GISAID nextfasta QC criteria
7 426 December 15, 2020
What is entropy in the https://nextstrain.org/ncov/global link?
3 282 December 10, 2020
Accumulated cost in using nextstrain
0 96 December 6, 2020
One of the European countries build is dating the root in 1961
1 138 November 28, 2020
Augur_recursion_limit
1 93 November 20, 2020
Make mafft's --nomemsave optional
2 125 November 9, 2020
Strain in Spain from December
0 176 October 26, 2020
Only global build found in ./auspice
4 119 October 23, 2020
Error with augur filter after latest git pull
7 173 October 14, 2020
What is the algorithm to assign dates to a phylogenetic tree of SARS-CoV-2?
1 139 September 29, 2020
Feedback on some default exclusions for nCoV workflow
1 123 September 25, 2020
Selected Sample - Transmission lines
1 133 September 21, 2020
SARS-CoV-2 Mutation Data
3 686 September 4, 2020
Galaxy Integration
1 108 August 25, 2020
Mugration weights
3 138 August 22, 2020