General


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Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

8 1169 June 2, 2021
About the General category

This category is for general discussion about anything and everything Nextstrain. Make a new topic in this category to: Describe how you’re currently using Nextstrain, so everyone can see awesome examples of genomic …

2 205 June 19, 2020
Build with newest nextstrain/ncov has API requests to mapbox 403:Forbidden
10 346 July 9, 2021
Regarding Extracting Nucleotide Mutations
7 162 June 25, 2021
SARS-CoV-2 conserved genomic segments
0 67 June 1, 2021
Why nextstrain does not have a bootstrap option in the tree building step?
0 80 May 27, 2021
SARS-CoV-2 Mutation Data
4 979 May 25, 2021
H7 hemmaglutinin phylogeny showing FCS
2 80 May 12, 2021
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 466: invalid start byte
3 269 May 11, 2021
Setting up context sequence set
1 78 May 10, 2021
Using logistic_growth to identify a more transmissible/fit lineage?
4 184 April 28, 2021
How to download variant data?
1 112 April 27, 2021
How to use the Nextstrain Group feature to share results
1 103 April 8, 2021
Narratives Link Setup
2 106 March 24, 2021
Extract nt and AA mutation info per branch from JSON after augur ancestral/translate/export
6 186 March 22, 2021
Avoiding large memory requirements by switching to `nextalign`
0 257 March 22, 2021
Auspice view: metadata, drop reference strains, combine multiple trees
3 136 March 20, 2021
Nextstrain community hosting with git-lfs?
2 93 March 16, 2021
How to evaluate confidence of migration events?
2 124 March 15, 2021
An "AttributeError: 'NoneType' object has no attribute 'shape'" when building phylogenetic tree using Augur
6 508 March 9, 2021
Perform analysis merging my dataset and South America dataset, without subsampling
2 102 March 8, 2021
Auspice doesn't install correctly
5 450 March 8, 2021
Correcting for sampling bias
0 101 February 28, 2021
Trouble identifying mutations in clade definitions (20J/501Y.V3)
2 207 February 28, 2021
Augur translate - gaps
1 92 February 23, 2021
Nextstrain build of 346 Sarbecoviruses partial rdrp
0 80 February 8, 2021
Map NextStrain names to others?
2 493 February 5, 2021
Filtering multiple tips on Auspice at once using queries as CSV
0 100 January 29, 2021
Pruning leaf --clock-filter-iqd
4 311 January 23, 2021
Rule align & deletions in coding regions
3 149 January 23, 2021