General


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Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

7 852 March 16, 2021
About the General category

This category is for general discussion about anything and everything Nextstrain. Make a new topic in this category to: Describe how you’re currently using Nextstrain, so everyone can see awesome examples of genomic …

2 141 June 19, 2020
How to use the Nextstrain Group feature to share results
1 12 April 8, 2021
Narratives Link Setup
2 42 March 24, 2021
Extract nt and AA mutation info per branch from JSON after augur ancestral/translate/export
6 65 March 22, 2021
Avoiding large memory requirements by switching to `nextalign`
0 75 March 22, 2021
Auspice view: metadata, drop reference strains, combine multiple trees
3 54 March 20, 2021
Nextstrain community hosting with git-lfs?
2 36 March 16, 2021
How to evaluate confidence of migration events?
2 56 March 15, 2021
An "AttributeError: 'NoneType' object has no attribute 'shape'" when building phylogenetic tree using Augur
6 140 March 9, 2021
Build with newest nextstrain/ncov has API requests to mapbox 403:Forbidden
9 89 March 8, 2021
Perform analysis merging my dataset and South America dataset, without subsampling
2 49 March 8, 2021
Auspice doesn't install correctly
5 177 March 8, 2021
Correcting for sampling bias
0 54 February 28, 2021
Trouble identifying mutations in clade definitions (20J/501Y.V3)
2 149 February 28, 2021
Augur translate - gaps
1 40 February 23, 2021
Nextstrain build of 346 Sarbecoviruses partial rdrp
0 46 February 8, 2021
Map NextStrain names to others?
2 230 February 5, 2021
Filtering multiple tips on Auspice at once using queries as CSV
0 48 January 29, 2021
Pruning leaf --clock-filter-iqd
4 219 January 23, 2021
Rule align & deletions in coding regions
3 106 January 23, 2021
How can a community build be added to the SARS-CoV-2 portal?
1 85 January 11, 2021
Separate subsampling procedure
0 60 January 5, 2021
Extracting geo-location from lab annotation
5 117 December 30, 2020
Show Transmission Lines for Location-Level Geographical Resolution
0 87 December 30, 2020
Make reproducible workflows with conda environments and pinned augur versions
0 206 August 25, 2020
GISAID nextfasta QC criteria
7 479 December 15, 2020
What is entropy in the https://nextstrain.org/ncov/global link?
3 348 December 10, 2020
Accumulated cost in using nextstrain
0 108 December 6, 2020
One of the European countries build is dating the root in 1961
1 172 November 28, 2020