General


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About the General category

This category is for general discussion about anything and everything Nextstrain. Make a new topic in this category to: Describe how you’re currently using Nextstrain, so everyone can see awesome examples of genomic …

2 261 June 19, 2020
Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

8 1333 June 2, 2021
Color clade of phylogenetic tree
1 29 September 22, 2021
Circles on the map
6 76 September 22, 2021
Wildcard in subsampling scheme
3 19 September 22, 2021
Augur frequencies error: RuntimeError: `nodes` value in results/_tip_frequencies.json is not a dictionary. Please check the formatting of this JSON!
3 74 September 20, 2021
Error in "main_workflow.smk" file
3 103 September 20, 2021
Masking of position 21987 in SARS-CoV-2 builds
1 66 September 16, 2021
Emerging lineages
6 155 September 2, 2021
Latitude and longitude file
1 57 September 7, 2021
Ncov git pull update
2 88 September 5, 2021
Filtering multiple tips on Auspice at once using queries as CSV
3 156 August 26, 2021
10 science questions on the SARS-COV-2 data
0 95 August 12, 2021
Build with newest nextstrain/ncov has API requests to mapbox 403:Forbidden
10 614 July 9, 2021
Regarding Extracting Nucleotide Mutations
7 200 June 25, 2021
SARS-CoV-2 conserved genomic segments
0 92 June 1, 2021
Why nextstrain does not have a bootstrap option in the tree building step?
0 123 May 27, 2021
SARS-CoV-2 Mutation Data
4 1035 May 25, 2021
H7 hemmaglutinin phylogeny showing FCS
2 109 May 12, 2021
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 466: invalid start byte
3 413 May 11, 2021
Setting up context sequence set
1 98 May 10, 2021
Using logistic_growth to identify a more transmissible/fit lineage?
4 233 April 28, 2021
How to download variant data?
1 139 April 27, 2021
How to use the Nextstrain Group feature to share results
1 135 April 8, 2021
Narratives Link Setup
2 139 March 24, 2021
Extract nt and AA mutation info per branch from JSON after augur ancestral/translate/export
6 217 March 22, 2021
Avoiding large memory requirements by switching to `nextalign`
0 299 March 22, 2021
Auspice view: metadata, drop reference strains, combine multiple trees
3 163 March 20, 2021
Nextstrain community hosting with git-lfs?
2 111 March 16, 2021
How to evaluate confidence of migration events?
2 150 March 15, 2021