General


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Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

5 599 January 14, 2021
About the General category

This category is for general discussion about anything and everything Nextstrain. Make a new topic in this category to: Describe how you’re currently using Nextstrain, so everyone can see awesome examples of genomic …

2 113 June 19, 2020
How can a community build be added to the SARS-CoV-2 portal?
1 37 January 11, 2021
Separate subsampling procedure
0 21 January 5, 2021
Extracting geo-location from lab annotation
5 51 December 30, 2020
Show Transmission Lines for Location-Level Geographical Resolution
0 38 December 30, 2020
Map NextStrain names to others?
0 41 December 30, 2020
Make reproducible workflows with conda environments and pinned augur versions
0 132 August 25, 2020
GISAID nextfasta QC criteria
7 330 December 15, 2020
Pruning leaf --clock-filter-iqd
3 104 December 10, 2020
What is entropy in the https://nextstrain.org/ncov/global link?
3 199 December 10, 2020
Accumulated cost in using nextstrain
0 66 December 6, 2020
One of the European countries build is dating the root in 1961
1 108 November 28, 2020
Augur_recursion_limit
1 62 November 20, 2020
Make mafft's --nomemsave optional
2 91 November 9, 2020
Strain in Spain from December
0 152 October 26, 2020
Only global build found in ./auspice
4 85 October 23, 2020
Error with augur filter after latest git pull
7 132 October 14, 2020
What is the algorithm to assign dates to a phylogenetic tree of SARS-CoV-2?
1 113 September 29, 2020
Feedback on some default exclusions for nCoV workflow
1 100 September 25, 2020
Selected Sample - Transmission lines
1 106 September 21, 2020
SARS-CoV-2 Mutation Data
3 597 September 4, 2020
Galaxy Integration
1 90 August 25, 2020
Mugration weights
3 120 August 22, 2020
Best practices for reporting workplace outbreaks/super spreading event data
6 150 August 22, 2020
Data privacy when viewing local and public builds
2 118 August 7, 2020
Global subsampling question
3 175 July 24, 2020
Validating COVID-19 Antibodies test positives
1 145 July 22, 2020
Removing data from Phylogeny Tree Options
4 139 July 21, 2020
Rule refine error: ValueError: x and y arrays must have at least 2 entries
5 185 July 6, 2020