General


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About the General category

This category is for general discussion about anything and everything Nextstrain. Make a new topic in this category to: Describe how you’re currently using Nextstrain, so everyone can see awesome examples of genomic …

2 451 June 19, 2020
Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

8 2865 June 2, 2021
File traitsdivision.mugration_model
2 34 August 12, 2022
Downloaded SVG has different fonts
0 17 August 10, 2022
How to deal with samples with way too many mutations
2 188 August 5, 2022
Export transmission lines
5 162 August 1, 2022
Ref Seqs for VOCs (especially 5'UTRs)
3 52 July 29, 2022
Bootstrap values not apppearing in refined tree
0 44 July 27, 2022
Trends in the prevalence of "private mutations"
11 321 July 19, 2022
Bootstrap values and branch length values does not show up in the tree
0 55 July 7, 2022
Calculating Genome Permulations from RNA Virus sequence
4 65 July 6, 2022
Genomic Epi - Macbook Pro M1 vs X86
1 58 June 30, 2022
Release of Nextclade 2.0.0: Thread for info, comments, questions
1 64 June 16, 2022
Import Beast tree
5 106 June 13, 2022
How to interpret the entropy data
5 73 June 9, 2022
Extract diversity data
3 76 June 1, 2022
Map not displayed completely
9 125 May 26, 2022
Losing country info in final build
4 150 May 17, 2022
Contextual strain list from augur filter
0 51 May 6, 2022
KeyError: 'Nextclade_pango' in ncov build
7 164 May 5, 2022
Pango lineage (Nextclade)
2 115 May 2, 2022
Private mutations
1 98 April 6, 2022
Least common ancestor
3 102 March 23, 2022
Quantifying Country Introductions in Nextstrain
2 120 March 4, 2022
Perform analysis merging my dataset and South America dataset, without subsampling
3 270 February 24, 2022
Spike protein sequences filtered for lineage
1 123 February 10, 2022
21L (Nextclade) assigned to 21M by Augur
1 106 February 2, 2022
Build nextstrain to own server
1 108 January 28, 2022
Quick note on configuring tip colouring in auspice
0 122 January 6, 2022
Sharing build profile
2 164 January 4, 2022