General


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About the General category

This category is for general discussion about anything and everything Nextstrain. Make a new topic in this category to: Describe how you’re currently using Nextstrain, so everyone can see awesome examples of genomic …

2 330 June 19, 2020
Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

8 1651 June 2, 2021
Quick note on configuring tip colouring in auspice
0 35 January 6, 2022
Sharing build profile
2 53 January 4, 2022
What is logistic gowth and fequency
0 42 December 30, 2021
Augur filter data
1 72 December 20, 2021
Augur frequencies error: RuntimeError: `nodes` value in results/_tip_frequencies.json is not a dictionary. Please check the formatting of this JSON!
7 257 December 16, 2021
Nextclade CLI clade calls different from Nextclade Web calls
3 70 December 10, 2021
Build with newest nextstrain/ncov has API requests to mapbox 403:Forbidden
11 876 December 10, 2021
Correspondance of SARS-CoV-2 annotations (Nextclade - Pangolin)
2 84 December 8, 2021
Author or lab information for a build
0 52 November 19, 2021
How to parse node data JSONs from the ncov workflow (or any Nextstrain workflow)
0 75 November 15, 2021
H7 hemmaglutinin phylogeny showing FCS
4 183 November 13, 2021
Error in "main_workflow.smk" file
9 401 October 29, 2021
Nextstrain Builds for Other Organisms
1 71 October 28, 2021
Pangolin AY.* designations
0 171 October 8, 2021
How to deal with samples with way too many mutations
1 106 October 1, 2021
Circles on the map
8 247 September 30, 2021
Color clade of phylogenetic tree
1 94 September 22, 2021
Wildcard in subsampling scheme
3 73 September 22, 2021
Masking of position 21987 in SARS-CoV-2 builds
1 164 September 16, 2021
Emerging lineages
6 286 September 2, 2021
Latitude and longitude file
1 129 September 7, 2021
Ncov git pull update
2 130 September 5, 2021
Filtering multiple tips on Auspice at once using queries as CSV
3 198 August 26, 2021
10 science questions on the SARS-COV-2 data
0 157 August 12, 2021
Regarding Extracting Nucleotide Mutations
7 244 June 25, 2021
SARS-CoV-2 conserved genomic segments
0 136 June 1, 2021
Why nextstrain does not have a bootstrap option in the tree building step?
0 179 May 27, 2021
SARS-CoV-2 Mutation Data
4 1131 May 25, 2021