General


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About the General category

This category is for general discussion about anything and everything Nextstrain. Make a new topic in this category to: Describe how you’re currently using Nextstrain, so everyone can see awesome examples of genomic …

2 296 June 19, 2020
Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…

8 1457 June 2, 2021
Augur frequencies error: RuntimeError: `nodes` value in results/_tip_frequencies.json is not a dictionary. Please check the formatting of this JSON!
6 197 November 19, 2021
Author or lab information for a build
0 27 November 19, 2021
How to parse node data JSONs from the ncov workflow (or any Nextstrain workflow)
0 39 November 15, 2021
H7 hemmaglutinin phylogeny showing FCS
4 149 November 13, 2021
Error in "main_workflow.smk" file
9 288 October 29, 2021
Nextstrain Builds for Other Organisms
1 55 October 28, 2021
Pangolin AY.* designations
0 113 October 8, 2021
How to deal with samples with way too many mutations
1 84 October 1, 2021
Circles on the map
8 192 September 30, 2021
Color clade of phylogenetic tree
1 76 September 22, 2021
Wildcard in subsampling scheme
3 55 September 22, 2021
Masking of position 21987 in SARS-CoV-2 builds
1 143 September 16, 2021
Emerging lineages
6 238 September 2, 2021
Latitude and longitude file
1 99 September 7, 2021
Ncov git pull update
2 114 September 5, 2021
Filtering multiple tips on Auspice at once using queries as CSV
3 187 August 26, 2021
10 science questions on the SARS-COV-2 data
0 143 August 12, 2021
Build with newest nextstrain/ncov has API requests to mapbox 403:Forbidden
10 751 July 9, 2021
Regarding Extracting Nucleotide Mutations
7 219 June 25, 2021
SARS-CoV-2 conserved genomic segments
0 112 June 1, 2021
Why nextstrain does not have a bootstrap option in the tree building step?
0 149 May 27, 2021
SARS-CoV-2 Mutation Data
4 1073 May 25, 2021
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 466: invalid start byte
3 520 May 11, 2021
Setting up context sequence set
1 114 May 10, 2021
Using logistic_growth to identify a more transmissible/fit lineage?
4 281 April 28, 2021
How to download variant data?
1 149 April 27, 2021
How to use the Nextstrain Group feature to share results
1 152 April 8, 2021
Narratives Link Setup
2 164 March 24, 2021