General

Topic	Replies	Views	Activity
About the General category This category is for general discussion about anything and everything Nextstrain. Make a new topic in this category to: Describe how you’re currently using Nextstrain, so everyone can see awesome examples of genomic …	2	575	June 19, 2020
Welcome to discussion.nextstrain.org! This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…	9	4529	August 16, 2022
Differences in clade classification (results folder vs JSON)	3	30	May 25, 2023
[Non-Nextstrain survey] What are the pain points in getting data ready for phylogenomic analysis?	2	31	May 19, 2023
SARS-CoV-2 E484K mutation and del 69-70 deletion	1	37	May 5, 2023
How to interpret the entropy data	8	348	May 4, 2023
Assigning Clades from SNPs	1	46	April 17, 2023
Nextclade - Dengue	1	87	March 23, 2023
nextStrain for human evolution and human strand/race/ethnicity	2	97	March 6, 2023
Exclusion of forced sequences after augur filter step - seasonalflu build	4	137	January 30, 2023
How can I download COVID genome data as a single file?	1	90	January 18, 2023
Options for Viewing Genotype	0	83	January 18, 2023
IndexError: too many indices for array: array is 1-dimensional, but 2 were indexed	3	360	December 23, 2022
NPM @metrichor/nextclade module is under your control?	1	93	November 24, 2022
License rules on providing a modified version of auspice/augur as a service	2	150	November 22, 2022
Number of subsampled metadata and sequences lower than indexed	1	113	October 31, 2022
How do I export raw date strings in addition to num date?	2	181	October 19, 2022
KeyError: 'Nextclade_pango' in ncov build	8	384	October 5, 2022
Export transmission lines	4	494	April 24, 2022
Monkeypox and common deletions	0	132	September 28, 2022
Build with newest nextstrain/ncov has API requests to mapbox 403:Forbidden	13	2202	September 22, 2022
Captions overlap due to "Color by" parameter	2	157	September 21, 2022
Is it possible to prevent translation when using genemap?	1	165	September 20, 2022
Downloaded SVG has different fonts	2	217	August 22, 2022
MPXV Nextclade Settings	0	156	August 16, 2022
File traitsdivision.mugration_model	2	204	August 12, 2022
How to deal with samples with way too many mutations	2	366	August 5, 2022
Ref Seqs for VOCs (especially 5'UTRs)	3	206	July 29, 2022
Bootstrap values not apppearing in refined tree	0	173	July 27, 2022
Trends in the prevalence of "private mutations"	11	587	July 19, 2022

About the General category

This category is for general discussion about anything and everything Nextstrain. Make a new topic in this category to: Describe how you’re currently using Nextstrain, so everyone can see awesome examples of genomic …

2

575

June 19, 2020

Welcome to discussion.nextstrain.org!

This website is intended to be a community forum for people using Nextstrain. We’re very interested to help public health and academic groups run Nextstrain analyses and share them (publicly or privately). The goal is to…