I want to know how you align genomes with reference and how make gaps in genomes with character
- until the number of nucleotides in the genomes equals the reference? Only you make gaps beginning and the end of the genomes?
results/masked.fasta and I see that some genomes have
- in the middle.
I only know one one function in
Pairwise2 that can do this but using this is very time consuming.I am curious to know how you make gaps in genomes for align with refrence?