@ralfduerr As a workaround for now, you can redirect nextstrain's stdin to /dev/null (instead of your terminal):
nextstrain build . --configfile builds_first.yaml --dag </dev/null | dot -Tpdf > dag.pdf
Hi both,
The new command with </dev/null worked out perfectly! Since you filed a bug, there is probably no need to copy all the outputs Victor asked for (happy to do though if it helps in any way).
Sorry that I forgot to start a new topic for this. Next time I’ll do 
Is there a chance to receive a notification when the filed bugs are resolved or should I just check the links from time to time?
Other than that, all was perfectly addressed! Many thanks to both of you!
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Happy to help! Indeed, no need anymore to copy the outputs asked for by Victor. 
If you have a GitHub account, you can “subscribe” to the bug (button on the right hand side) and get notifications on all activity, including resolution.
@ralfduerr Both the original permission denied error and the stdout vs. stderr issue with --dag you encountered should be resolved in the just-released Nextstrain CLI 3.1.1 (see changes).
That’s awesome!!
Many thanks for letting me know!
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