Hello,
I was trying out the “View in Other Platforms” option for Nextclade with Mpox data.
I tried the mpox clade IIb tree (updated 2024-09-20), and when I dropped in data I wanted to add in NextClade I saw a mismatch warning and the queries each had several thousand mutations detected compared to “reference”. Following this I tried adding in GenBank accession: PQ352006. This sequence is already present in the 2024-09-20 version of the clade IIb tree, but again this give a mismatch warning and over 1000 mutations.