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Are gaps due to true insertions ok to leave in the alignment?
|
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1
|
93
|
August 20, 2024
|
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View in NextClade Feature
|
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0
|
37
|
September 20, 2024
|
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Comparable mutation metrics?
|
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1
|
72
|
September 18, 2024
|
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Tree shows an X at the end of branches... what do they mean?
|
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2
|
101
|
July 22, 2024
|
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Difference between sequence samples based on Dataset
|
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1
|
46
|
September 16, 2024
|
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Reduce number of references in RSV phylogenetic tree - Nextclade CLI
|
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1
|
55
|
September 9, 2024
|
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Mpox Sequence Changes from Root
|
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2
|
84
|
September 5, 2024
|
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"Could not determine delimiter" error with metadata files
|
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5
|
360
|
August 28, 2024
|
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Methods to automate the list of pangos for augur filter?
|
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8
|
140
|
August 27, 2024
|
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Question about upload protocol for remote upload
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1
|
49
|
August 20, 2024
|
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Mpox lineage in metadata is different from what shows in the tree
|
|
2
|
96
|
August 20, 2024
|
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Tree topology different than expected
|
|
0
|
36
|
August 16, 2024
|
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Influenza vaccine selection dates
|
|
1
|
49
|
August 15, 2024
|
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Resource for representative nucleotide changes for Nextstrain clades
|
|
1
|
59
|
August 2, 2024
|
|
Download and rename all builds from nextstrain.org/groups
|
|
5
|
71
|
August 1, 2024
|
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Titer measurement formats and conversion to csv for nextflu
|
|
3
|
58
|
July 30, 2024
|
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Confirming presence of amino acid that matches the reference sequence
|
|
0
|
48
|
July 30, 2024
|
|
Mpox: nextstrain issue
|
|
2
|
83
|
July 20, 2024
|
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How to change the reference sequence?
|
|
2
|
63
|
July 18, 2024
|
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Titer measurement of seasonal influenza
|
|
2
|
376
|
July 17, 2024
|
|
Geography: will augur recognize correct region if the correct country is provided?
|
|
1
|
41
|
July 13, 2024
|
|
Lost the tip names (labels)
|
|
2
|
67
|
July 11, 2024
|
|
Samples have missing collection date and country info
|
|
2
|
210
|
July 10, 2024
|
|
S3 or URL links for workflow data
|
|
6
|
150
|
July 3, 2024
|
|
Ingest workflow: NCBI Datasets, Entrez, or something else?
|
|
1
|
138
|
June 28, 2024
|
|
NextClade Variant Calling info
|
|
11
|
875
|
June 20, 2024
|
|
Reference tree for RSV used in NextClade webstie
|
|
3
|
257
|
June 19, 2024
|
|
How can I know the Nextclade_pango for each of SC2 sequences?
|
|
4
|
1038
|
June 15, 2024
|
|
Question about mafft alignment using a reference sequence
|
|
2
|
354
|
June 14, 2024
|
|
Selection of RSV reference sequences
|
|
2
|
259
|
May 23, 2024
|