I only have ~251G RAM. This means that I will often get mafft’s
error during the agur align step.
I’ve been getting around this by creating pre-alignments, but it’d save me some hassle if I could just turn off the
--nomemsave paramater. I know this is probably included for speed, but it would really help me out if this was an optional parameter when running mafft.
Also, it’d really help me out if I could use mafft’s
--large parameter as well (creates temp files instead of loading everything to memory).