Hello All,
Good Evening/Morning
I was running Nextstrain on local data, I got this error message when I submitted the run:
(nextstrain) bioinformatics@G1:/mnt/d/Bioinformatics/nextstrain/ncov$ snakemake --profile my_profiles/investigation_1/ -p
Config file defaults/parameters.yaml is extended by additional config specified via the command line.
Building DAG of jobs...
MissingInputException in line 262 of /mnt/d/Bioinformatics/nextstrain/ncov/workflow/snakemake_rules/main_workflow.smk:
Missing input files for rule subsample:
output: results/default-build/sample-all.txt
wildcards: build_name=default-build, subsample=all
affected files:
results/sanitized_metadata_investigation_1.tsv.xz
Does anyone have an idea how to solve it?
this is the nextstrain version
(nextstrain) bioinformatics@G1:/mnt/d/Bioinformatics/nextstrain/ncov$ nextstrain --version
nextstrain.cli 3.2.3
Thank you