Hello, thank you for this excellent tool. I want to carry out the analysis of Colombia and the 6 global regions, but at the end of my analysis, Colombia and the regions appear but without South America any advice? this is the file i use inputs: - name: prueba-3_1 metadata: data/prueba1/prue…

the rest of the countries (Argentina, Peru, Ecuador…) must be represented in a circle that corresponds to the region of South America, as in the other regions of the world (North America , Europe …) This isn’t possible with the current workflow but it shouldn’t be too hard for you to do this. Op…

Hi @juan_dc – I think this is the same issue as this recent post: Losing country info in final build and should be fixed by removing the region: South America from your builds declaration. (Your subsampling scheme doesn’t use this value so it should have no detrimental effects.)

Hi, I tried deleting the region line and in the final phase I find this error: augur traits is using TreeTime version 0.8.6 Assigned discrete traits to 1286 out of 1286 taxa. NOTE: previous versions (<0.7.0) of this command made a 'short-branch length assumption. TreeTime now optimizes the overa…

When you specify a region in the build (as above), the metadata is modified such that a sample from outside South America (e.g. “France”) has it’s country changed to the corresponding region (e.g. “Europe”). This has the effect of reducing the set of values for the country key which you are performi…

Hello, I eliminated the country and division line in traits, but when I saw in auspice I had a division of all the countries worldwide Is there any way that when selecting country (Colombia) in auspice the rest of the world remains as regions (north america, south america…)? Image result [next1…

the result I want but I need south America [next2] posted in another message due to the limitation of 1 image

Thanks for those images, they’re helpful. So we do want region: South America in the build declaration, as that will change the metadata of non-South-American counties to be their region (continent) as shown on the second screenshot. Note that this happens after subsampling. I’m not sure why South…

In this test I changed the country for Spain and now Europe disappears [4] lines: inputs: name: prueba-2-2 metadata: data/prueba1/prueba_global.tsv sequences: data/prueba1/prueba_global.fasta builds: global_prueba2-2: subsampling_scheme: spain_sampling region: Europe country: Spain sub…

[image] juan_dc: Is there any way that when selecting country (Colombia) in auspice the rest of the world remains as regions (north america, south america…)? Looks like you’ve got this working now :slight_smile: [image] juan_dc: but I can’t get only the South American region to be repres…

but my point is that in South America you only see Colombia, the rest of the countries (Argentina, Peru, Ecuador…) must be represented in a circle that corresponds to the region of South America, as in the other regions of the world (North America , Europe …) I hope you can help me, I have tried di…

My analysis dont show the region from my country

Help and Getting Started

juan_dc May 13, 2022, 12:53am 8

the result I got when adding the lines, in other attempts I have obtained similar results but I can’t get only the South American region to be represented

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My analysis dont show the region from my country

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