Hi,
I have a question regarding viewing the genotype in the auspice output. For instance, is it possible to pre specify amino acid locations for a particular site, and when you click on that site when colouring by “genotype”, that value is immediately put into the position section. E.g. it should look something like this
I did take a look at the auspice_config.json options (augur/schema-auspice-config-v2.json at master · nextstrain/augur · GitHub) but I did not find anything that could help. The closest thing I found that I might be able to go off is in “colourings”, for the key “gt” (for genotype), I add something like the “legends” property like this:
"colorings": [ { "key": "gt", "title": "Genotype", "type": "categorical", "legend": [ { "value": "here" }, { "display": "HRSVgp01" } ]
Is this possible to do?