Hello!
I have updated the runtime and now wanted to update the CLI. Analysis runs successfully, but when I want to view it with nextstrain view . I get an 404 error.
When I want to update the CLI with conda install -p /home/maxim/.nextstrain/runtimes/conda/env nextstrain-cli==10.2.1.post1
I get the following error:
Channels:
-
bioconda -
conda-forge -
defaults -
nextstrainPlatform: linux-64Collecting package metadata (repodata.json): doneSolving environment: / warning libmamba Added empty dependency for problem type SOLVER_RULE_UPDATEfailed
LibMambaUnsatisfiableError: Encountered problems while solving:
-
nothing provides xz ==5.2.9 h166bdaf_0 needed by nextstrain-base-20221208T220648Z-hb0f4dca_1_locked
Could not solve for environment specsThe following packages are incompatible├─ nextstrain-base is installable with the potential options│ ├─ nextstrain-base [20250512T163842Z|20250512T163902Z|…|20250729T235918Z] would require│ │ └─ nextstrain-cli [9.0.0 pyhdfd78af_0|==9.0.0 pyhdfd78af_0], which can be installed;│ ├─ nextstrain-base 20221019T172207Z would require│ │ └─ python ==3.10.6 h582c2e5_0_cpython, which can be installed;│ ├─ nextstrain-base 20221109T175138Z would require│ │ └─ python ==3.10.6 ha86cf86_0_cpython, which can be installed;│ ├─ nextstrain-base [20221208T010248Z|20221208T010417Z|…|20230122T012621Z] would require│ │ └─ python ==3.10.8 h4a9ceb5_0_cpython, which can be installed;│ ├─ nextstrain-base [20221208T220648Z|20221208T230306Z] would require│ │ └─ xz ==5.2.9 h166bdaf_0, which does not exist (perhaps a missing channel);│ ├─ nextstrain-base [20230208T180335Z|20230221T201501Z|…|20230321T221347Z] would require│ │ └─ python ==3.10.9 he550d4f_0_cpython, which can be installed;│ ├─ nextstrain-base [20230329T170128Z|20230329T181653Z|…|20230510T123359Z] would require│ │ └─ python ==3.10.10 he550d4f_0_cpython, which can be installed;│ ├─ nextstrain-base [20230512T164231Z|20230515T141115Z|…|20230615T171309Z] would require│ │ └─ python ==3.10.11 he550d4f_0_cpython, which can be installed;│ ├─ nextstrain-base 20230531T111651Z would require│ │ └─ libhwloc ==2.9.1 h1633a84_2, which does not exist (perhaps a missing channel);│ ├─ nextstrain-base [20230601T220052Z|20230605T232903Z] would require│ │ └─ libhwloc ==2.9.1 cpu_h1633a84_5, which does not exist (perhaps a missing channel);│ ├─ nextstrain-base [20230628T211222Z|20230717T174555Z|…|20231009T232421Z] would require│ │ └─ python ==3.10.12 hd12c33a_0_cpython, which can be installed;│ ├─ nextstrain-base [20231030T184351Z|20231030T204813Z|…|20231222T222508Z] would require│ │ └─ python ==3.10.13 hd12c33a_0_cpython, which can be installed;│ ├─ nextstrain-base [20240112T010634Z|20240112T192329Z|…|20240318T235157Z] would require│ │ └─ python ==3.10.13 hd12c33a_1_cpython, which can be installed;│ ├─ nextstrain-base [20240321T170340Z|20240412T181818Z|…|20240603T220243Z] would require│ │ └─ python ==3.10.14 hd12c33a_0_cpython, which can be installed;│ ├─ nextstrain-base [20240612T205814Z|20240624T163543Z|20240701T185224Z|20240701T200623Z|20240705T212646Z] would require│ │ └─ nextstrain-cli ==8.2.0 pyhdfd78af_0, which can be installed;│ ├─ nextstrain-base [20240701T224948Z|20240702T000115Z|20240702T140038Z|20240702T151219Z] would require│ │ └─ matplotlib-base ==3.9.0 py311hffb96ce_0, which does not exist (perhaps a missing channel);│ ├─ nextstrain-base [20240710T230712Z|20240712T013205Z|…|20240731T220731Z] would require│ │ └─ nextstrain-cli ==8.5.0 pyhdfd78af_0, which can be installed;│ ├─ nextstrain-base [20240802T172541Z|20240806T011238Z|20240820T183407Z|20240822T214654Z|20240827T205935Z] would require│ │ └─ nextstrain-cli ==8.5.1 pyhdfd78af_0, which can be installed;│ ├─ nextstrain-base [20240830T190914Z|20240903T200150Z] would require│ │ └─ nextstrain-cli ==8.5.2 pyhdfd78af_0, which can be installed;│ ├─ nextstrain-base [20240905T054709Z|20240912T204516Z|…|20241023T181627Z] would require│ │ └─ nextstrain-cli ==8.5.3 pyhdfd78af_0, which can be installed;│ ├─ nextstrain-base [20241108T185640Z|20241114T115133Z|…|20241122T183431Z] would require│ │ └─ nextstrain-cli ==8.5.4 pyhdfd78af_0, which can be installed;│ └─ nextstrain-base [20241209T225651Z|20241218T003349Z|…|20250311T191147Z] would require│ └─ nextstrain-cli ==8.5.4 pyhdfd78af_1, which can be installed;├─ nextstrain-cli 10.2.1.post1 is not installable because it conflicts with any installable versions previously reported;└─ pin-1 is not installable because it requires└─ python 3.11.* , which conflicts with any installable versions previously reported.
How do I fix this?
Check-setup gives this:
nextstrain check-setup
nextstrain-cli is up to date!
Testing your setup…
# Checking docker…
✔ yes: docker is installed
✘ no: docker run works
? unknown: containers have access to >2 GiB of memory
✔ yes: image is new enough for this CLI version
# docker is not supported
# Checking conda…
✔ yes: operating system is supported
✔ yes: runtime data dir doesn't have spaces
✔ yes: runtime appears set up
✔ yes: snakemake is installed and runnable
✔ yes: augur is installed and runnable
✔ yes: auspice is installed and runnable
# conda is supported
best regards
