I’m attempting to set up the nextclade CLI on a linux computer that I can ssh to from a windows PC to run my analyses. However, the documentation is fairly cryptic with respect to installation. I have attempted both manual and command-line downloads from here.
I’m not sure how to get from the downloaded shared library file to start using the
nextclade commands. I haven’t found an application yet that is able to open the downloaded nextclade file (I’m not even sure I’m supposed to open it )
Any time I enter
nextclade --help in that folder, I get a
nextclade: command not found error; and bash will not open the file, and to my knowledge I’m not even in a nextclade-specific environment.
Ultimately, I’m hoping for a bit more clear instructions on steps to take after the download step. Additionally, what commands can I use to make sure my local nextclade CLI is up to date before I run my analyses? Your help is greatly appreciated!
Thank you for your time,