I want to download the dataset sars-cov-2 but when i type “nextclade dataset get --name=‘sars-cov-2’ --output-dir=‘data/sars-cov-2’”,it doesnot work,and returns the error"Error: OptionParseException: Option ‘name’ does not exist". How to solve?
rneher
August 30, 2021, 10:22am
2
sorry about this. The documentation is out-of-sync. The dataset get will work once we push the new release out the door tomorrow.
see here for more details:
opened 12:16PM - 27 Aug 21 UTC
closed 05:36AM - 30 Aug 21 UTC
Hi,
I tested the docker versions of nextclade (1.2.3 and 1.2.1) as well as th… e nextclade executable (linux).
From the readme file of the data repository, I understood that I had to use to the nextclade dataset command. However, it seems that the nextclade command does not accept the dataset argument.
```
$nextclade dataset
Error: ErrorCliOptionInvalidValue: Error: argument `--input-fasta` is required
```
```
$nextclade dataset get --name='sars-cov-2' --reference='MN908947' --output-dir='data/sars-cov-2_MN908947'
Error: OptionParseException: Option ‘name’ does not exist
```
I am surely doing something wrong but I really don't know what. Hopefully, you can help me.
Kind regards,
Sylvain
Thanks for your reply. * Looking forward to the new version of your software.
Hi @peilong ,
Nextclade CLI 1.3.0 with datasets feature have been released earlier today. Please give it a new try!
Changelog and binaries: Release 1.3.0 · nextstrain/nextclade · GitHub Docker Hub docker pull nextstrain/nextclade to get the fresh version)