Hello,
I dragged and dropped .jason files for HA and NA into auspice, and was expecting to see a tanglegram connecting all the nodes in both trees, but only a few of them have lines connecting (see image below). The sample descriptions are exactly the same between both trees, so I don’t understand why the tanglegram is not working.
Hi @leocaserta,
The tangletree only connects samples that have the exact same name. For example, if you look at the tangletree for the Nextstrain avian flu builds at https://nextstrain.org/flu/avian/h5n1/ha:flu/avian/h5n1/na, you can see many samples are connected, but not all of them.
If you are able to share your JSONs, I can help you take a look at why your samples are not connecting as expected.
Best,
Jover
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Hi @joverlee , thank you for your help.
I think I found out the problem. Some strain names were lower case in a tree while they were upper case in the other.
Leonardo