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Migration matrix
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1
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121
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February 22, 2023
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Discrepancy between Usher and Nextclade lineage calls for mpox
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1
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120
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February 21, 2023
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Ancestral sequences
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2
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157
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February 16, 2023
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Make Auspice entropy panel show mutations with respect to arbitrary sequence (reference) rather than (reconstructed) root of the tree
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2
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158
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February 15, 2023
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Yearly time scale in newick files & leap years
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1
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128
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February 15, 2023
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Singularity Image
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6
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536
|
February 14, 2023
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Custom newick to JSON
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8
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487
|
February 8, 2023
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Downloading newick versions programatically
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4
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132
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January 27, 2023
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Sites to ignore for Omicron tree building
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0
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203
|
January 26, 2023
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Samples in json vs newick files, & branch lengths
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2
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146
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January 24, 2023
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Is the default IQtree parameter usually good enough?
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0
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141
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January 17, 2023
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Auspice view fails to load the datasets
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2
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154
|
January 16, 2023
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Nextclade cli - shortcuts to get just seqName and Nextclade_pango for all recent GISAID samples
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7
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291
|
January 14, 2023
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seqName format different between GISAID FASTA All sequences package vs search results
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2
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173
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January 14, 2023
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Broken workflow after updating runtime and CLI
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3
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181
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December 15, 2022
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Some African Countries (Burkina Faso, Sierra Leone) Build failed
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2
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155
|
December 12, 2022
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My analysis dont show me the especific location that i expect
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2
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186
|
November 21, 2022
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Zero value for coloring in nextstrain
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5
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195
|
November 17, 2022
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How do I build a reference genome
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0
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171
|
November 14, 2022
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Incorperating `argur distance` outputs
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4
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218
|
November 8, 2022
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Color in emerging lineages
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2
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248
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October 25, 2022
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Why do my sequences end up in excluded_by_diagnostics.txt?
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3
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399
|
October 18, 2022
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Nextclade cli newbie error (windows): Found argument '--input-dataset' which wasn't expected
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2
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315
|
October 15, 2022
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Is there any way to locally view the result like clades.nextstrain.org?
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8
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391
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September 20, 2022
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Where can I look up clade defining mutations for seasonal flu?
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0
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194
|
August 31, 2022
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Obtain numerical values on the transmission between countries
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3
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282
|
September 6, 2022
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Error in jobid: 22
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0
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178
|
September 5, 2022
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How to visualize result
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1
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226
|
September 1, 2022
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Error: Alignment must have at least 3 sequences
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3
|
520
|
August 31, 2022
|
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Windows 10 won't install Nextclade CLI
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2
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238
|
August 19, 2022
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