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Understanding RSV clade assignment
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4
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260
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January 12, 2024
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Alignments in Nextstrain
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2
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265
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January 12, 2024
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How to combine multiple .json files in a single auspice view?
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9
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223
|
January 2, 2024
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Accession in sequences.fasta, but not in nexstrain website
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2
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218
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December 20, 2023
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Does the rate estimate include a 95% confidence interval?
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1
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338
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December 19, 2023
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Fixing the clock rate when refining an H3N2 phylogenetic tree?
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1
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308
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December 19, 2023
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ERROR: 300 or more distinct discrete states found
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1
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259
|
December 19, 2023
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Subsampling Local DENV dataset based on genetic similarity
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1
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265
|
December 19, 2023
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How to viz flu vaccine strain as the nextstrain seasonal flu page
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1
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313
|
December 19, 2023
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Refine without an alignment
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2
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192
|
December 18, 2023
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How to download avian influenza fasta and metadata files from GISAID or GenBank in a compatible format?
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1
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355
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December 15, 2023
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Auspice tanglegrams with more than 2 trees?
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2
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186
|
December 1, 2023
|
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Augur TreeTime error
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6
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337
|
October 12, 2023
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How to use Nextstrain seasonal flu graph as reference tree for Nextclade?
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1
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496
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October 5, 2023
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Change substitution model in SARS-CoV-2 workflow?
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4
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405
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October 5, 2023
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Displaying a Map in Auspice
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2
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378
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August 22, 2023
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Clade Labeling forces AA Mut-file although stated otherwise
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2
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330
|
August 21, 2023
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Clade difference between influenza HA references
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1
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502
|
August 10, 2023
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Error message when running Zika tutorial workflow
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9
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551
|
July 17, 2023
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No release for SARS-CoV-2 May update of nextclade_data?
|
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7
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423
|
June 21, 2023
|
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Building frequency plot
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1
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227
|
June 13, 2023
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Error running ncov-tutorial after fresh install
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3
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368
|
May 11, 2023
|
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Is this the expected behaviour of augur tree?
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4
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366
|
May 10, 2023
|
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Inconsistencies in the result of augur traits
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1
|
233
|
May 8, 2023
|
|
Zika Index Sequences Error
|
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1
|
359
|
May 1, 2023
|
|
Ncov: Errors from combine_metadata.py due to unexpected behavior in sanitize_metadata.py
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|
28
|
1111
|
May 1, 2023
|
|
Twice-mutated locations between parent and child lineages
|
|
1
|
427
|
April 30, 2023
|
|
Trouble Installing Nextstrain CLI
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|
7
|
370
|
April 29, 2023
|
|
GISAID, NCBI or ENA
|
|
2
|
500
|
April 28, 2023
|
|
Access GISAID with NEXTSTRAIN
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|
2
|
557
|
April 28, 2023
|