|
Error with a flu reference sequence for alignment
|
|
8
|
277
|
March 27, 2024
|
|
Error: unknown sequence format for Augur tree
|
|
2
|
477
|
March 27, 2024
|
|
Error in combining ndjson-files in mpox pipeline
|
|
4
|
154
|
March 21, 2024
|
|
Preparing data from paired-end FASTQ files
|
|
1
|
180
|
March 7, 2024
|
|
.meta.genome_annotations failed additionalProperties validation for false
|
|
3
|
1215
|
March 7, 2024
|
|
How Shannon entropy calculated per codon?
|
|
5
|
866
|
February 29, 2024
|
|
Nexststrain RSV FullGenome clades
|
|
4
|
280
|
February 14, 2024
|
|
Yamagata fluB HA1 amino acid in the 'Genotype' or 'Color By' selections
|
|
3
|
131
|
February 14, 2024
|
|
How to add years on x-axis using nextclade
|
|
2
|
300
|
February 11, 2024
|
|
How to show years on x-axis using nextclade
|
|
1
|
172
|
February 11, 2024
|
|
{"E": {"end": 26472, "seqid": "data/genemap.gff"…} failed required validation for ["nuc"]
|
|
2
|
131
|
February 3, 2024
|
|
Nextstrain group
|
|
2
|
423
|
August 31, 2021
|
|
Windows 10 won't install Nextclade CLI
|
|
6
|
547
|
January 20, 2024
|
|
Understanding RSV clade assignment
|
|
4
|
304
|
January 12, 2024
|
|
Alignments in Nextstrain
|
|
2
|
279
|
January 12, 2024
|
|
How to combine multiple .json files in a single auspice view?
|
|
9
|
255
|
January 2, 2024
|
|
Accession in sequences.fasta, but not in nexstrain website
|
|
2
|
223
|
December 20, 2023
|
|
Does the rate estimate include a 95% confidence interval?
|
|
1
|
350
|
December 19, 2023
|
|
Fixing the clock rate when refining an H3N2 phylogenetic tree?
|
|
1
|
317
|
December 19, 2023
|
|
ERROR: 300 or more distinct discrete states found
|
|
1
|
261
|
December 19, 2023
|
|
Subsampling Local DENV dataset based on genetic similarity
|
|
1
|
267
|
December 19, 2023
|
|
How to viz flu vaccine strain as the nextstrain seasonal flu page
|
|
1
|
322
|
December 19, 2023
|
|
Refine without an alignment
|
|
2
|
194
|
December 18, 2023
|
|
How to download avian influenza fasta and metadata files from GISAID or GenBank in a compatible format?
|
|
1
|
428
|
December 15, 2023
|
|
Auspice tanglegrams with more than 2 trees?
|
|
2
|
205
|
December 1, 2023
|
|
Augur TreeTime error
|
|
6
|
383
|
October 12, 2023
|
|
How to use Nextstrain seasonal flu graph as reference tree for Nextclade?
|
|
1
|
506
|
October 5, 2023
|
|
Change substitution model in SARS-CoV-2 workflow?
|
|
4
|
413
|
October 5, 2023
|
|
Displaying a Map in Auspice
|
|
2
|
398
|
August 22, 2023
|
|
Clade Labeling forces AA Mut-file although stated otherwise
|
|
2
|
335
|
August 21, 2023
|