|
Ncov: Errors from combine_metadata.py due to unexpected behavior in sanitize_metadata.py
|
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28
|
1130
|
May 1, 2023
|
|
Twice-mutated locations between parent and child lineages
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1
|
430
|
April 30, 2023
|
|
Trouble Installing Nextstrain CLI
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7
|
370
|
April 29, 2023
|
|
GISAID, NCBI or ENA
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2
|
510
|
April 28, 2023
|
|
Access GISAID with NEXTSTRAIN
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|
2
|
559
|
April 28, 2023
|
|
GISAID account activation help - urgent
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|
2
|
648
|
April 28, 2023
|
|
Building a Custom Nextstrain - Alignment Error
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6
|
424
|
April 17, 2023
|
|
Intro Event Count
|
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3
|
411
|
April 13, 2023
|
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Help for phylogenetic tree about Dengue
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|
15
|
879
|
April 6, 2023
|
|
Phylogenetic tree dates earlier than root
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2
|
344
|
April 4, 2023
|
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Creating a dataset with parent-child sequence relations from Auspice tree
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7
|
371
|
March 23, 2023
|
|
How add RBD immune escape score and ACE2 affinity score in the phylogenetics tree
|
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1
|
542
|
March 14, 2023
|
|
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 1252: invalid start byte
|
|
2
|
1620
|
March 10, 2023
|
|
Error in rule align: argument '--jobs'
|
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7
|
444
|
February 28, 2023
|
|
Augur not found despite having installed Nextstrain CLI
|
|
2
|
351
|
February 27, 2023
|
|
How to add branch labels from node data
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1
|
452
|
February 23, 2023
|
|
Migration matrix
|
|
1
|
312
|
February 22, 2023
|
|
Discrepancy between Usher and Nextclade lineage calls for mpox
|
|
1
|
342
|
February 21, 2023
|
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Ancestral sequences
|
|
2
|
348
|
February 16, 2023
|
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Make Auspice entropy panel show mutations with respect to arbitrary sequence (reference) rather than (reconstructed) root of the tree
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2
|
390
|
February 15, 2023
|
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Yearly time scale in newick files & leap years
|
|
1
|
290
|
February 15, 2023
|
|
Singularity Image
|
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6
|
754
|
February 14, 2023
|
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Custom newick to JSON
|
|
8
|
940
|
February 8, 2023
|
|
Downloading newick versions programatically
|
|
4
|
335
|
January 27, 2023
|
|
Sites to ignore for Omicron tree building
|
|
0
|
377
|
January 26, 2023
|
|
Samples in json vs newick files, & branch lengths
|
|
2
|
360
|
January 24, 2023
|
|
Is the default IQtree parameter usually good enough?
|
|
0
|
360
|
January 17, 2023
|
|
Auspice view fails to load the datasets
|
|
2
|
338
|
January 16, 2023
|
|
Nextclade cli - shortcuts to get just seqName and Nextclade_pango for all recent GISAID samples
|
|
7
|
490
|
January 14, 2023
|
|
seqName format different between GISAID FASTA All sequences package vs search results
|
|
2
|
370
|
January 14, 2023
|