Ncov: Errors from combine_metadata.py due to unexpected behavior in sanitize_metadata.py
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28
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1130
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May 1, 2023
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Twice-mutated locations between parent and child lineages
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1
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430
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April 30, 2023
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Trouble Installing Nextstrain CLI
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7
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370
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April 29, 2023
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GISAID, NCBI or ENA
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2
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510
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April 28, 2023
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Access GISAID with NEXTSTRAIN
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2
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559
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April 28, 2023
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GISAID account activation help - urgent
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2
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648
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April 28, 2023
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Building a Custom Nextstrain - Alignment Error
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6
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424
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April 17, 2023
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Intro Event Count
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3
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411
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April 13, 2023
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Help for phylogenetic tree about Dengue
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15
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879
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April 6, 2023
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Phylogenetic tree dates earlier than root
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2
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344
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April 4, 2023
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Creating a dataset with parent-child sequence relations from Auspice tree
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7
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371
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March 23, 2023
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How add RBD immune escape score and ACE2 affinity score in the phylogenetics tree
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1
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542
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March 14, 2023
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UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 1252: invalid start byte
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2
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1620
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March 10, 2023
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Error in rule align: argument '--jobs'
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7
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444
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February 28, 2023
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Augur not found despite having installed Nextstrain CLI
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2
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351
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February 27, 2023
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How to add branch labels from node data
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1
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452
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February 23, 2023
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Migration matrix
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1
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312
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February 22, 2023
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Discrepancy between Usher and Nextclade lineage calls for mpox
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1
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342
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February 21, 2023
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Ancestral sequences
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2
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348
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February 16, 2023
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Make Auspice entropy panel show mutations with respect to arbitrary sequence (reference) rather than (reconstructed) root of the tree
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2
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390
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February 15, 2023
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Yearly time scale in newick files & leap years
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1
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290
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February 15, 2023
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Singularity Image
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6
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754
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February 14, 2023
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Custom newick to JSON
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8
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940
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February 8, 2023
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Downloading newick versions programatically
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4
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335
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January 27, 2023
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Sites to ignore for Omicron tree building
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0
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377
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January 26, 2023
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Samples in json vs newick files, & branch lengths
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2
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360
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January 24, 2023
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Is the default IQtree parameter usually good enough?
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0
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360
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January 17, 2023
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Auspice view fails to load the datasets
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2
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338
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January 16, 2023
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Nextclade cli - shortcuts to get just seqName and Nextclade_pango for all recent GISAID samples
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7
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490
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January 14, 2023
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seqName format different between GISAID FASTA All sequences package vs search results
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2
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370
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January 14, 2023
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