Discrepancy between Usher and Nextclade lineage calls for mpox
|
|
1
|
278
|
February 21, 2023
|
Ancestral sequences
|
|
2
|
316
|
February 16, 2023
|
Make Auspice entropy panel show mutations with respect to arbitrary sequence (reference) rather than (reconstructed) root of the tree
|
|
2
|
320
|
February 15, 2023
|
Yearly time scale in newick files & leap years
|
|
1
|
265
|
February 15, 2023
|
Singularity Image
|
|
6
|
694
|
February 14, 2023
|
Custom newick to JSON
|
|
8
|
828
|
February 8, 2023
|
Downloading newick versions programatically
|
|
4
|
268
|
January 27, 2023
|
Sites to ignore for Omicron tree building
|
|
0
|
342
|
January 26, 2023
|
Samples in json vs newick files, & branch lengths
|
|
2
|
297
|
January 24, 2023
|
Is the default IQtree parameter usually good enough?
|
|
0
|
316
|
January 17, 2023
|
Auspice view fails to load the datasets
|
|
2
|
299
|
January 16, 2023
|
Nextclade cli - shortcuts to get just seqName and Nextclade_pango for all recent GISAID samples
|
|
7
|
437
|
January 14, 2023
|
seqName format different between GISAID FASTA All sequences package vs search results
|
|
2
|
335
|
January 14, 2023
|
Broken workflow after updating runtime and CLI
|
|
3
|
349
|
December 15, 2022
|
Some African Countries (Burkina Faso, Sierra Leone) Build failed
|
|
2
|
307
|
December 12, 2022
|
My analysis dont show me the especific location that i expect
|
|
2
|
341
|
November 21, 2022
|
Zero value for coloring in nextstrain
|
|
5
|
361
|
November 17, 2022
|
How do I build a reference genome
|
|
0
|
315
|
November 14, 2022
|
Incorperating `argur distance` outputs
|
|
4
|
362
|
November 8, 2022
|
Color in emerging lineages
|
|
2
|
408
|
October 25, 2022
|
Why do my sequences end up in excluded_by_diagnostics.txt?
|
|
3
|
650
|
October 18, 2022
|
Nextclade cli newbie error (windows): Found argument '--input-dataset' which wasn't expected
|
|
2
|
481
|
October 15, 2022
|
Is there any way to locally view the result like clades.nextstrain.org?
|
|
8
|
590
|
September 20, 2022
|
Where can I look up clade defining mutations for seasonal flu?
|
|
0
|
358
|
August 31, 2022
|
Obtain numerical values on the transmission between countries
|
|
3
|
419
|
September 6, 2022
|
Error in jobid: 22
|
|
0
|
300
|
September 5, 2022
|
How to visualize result
|
|
1
|
382
|
September 1, 2022
|
Error: Alignment must have at least 3 sequences
|
|
3
|
810
|
August 31, 2022
|
Increase weight or colors of transmission lines
|
|
1
|
329
|
August 4, 2022
|
Getting node support values in the ncov workflow
|
|
2
|
507
|
August 4, 2022
|