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Comparable mutation metrics?
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1
|
73
|
September 18, 2024
|
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Mpox lineage in metadata is different from what shows in the tree
|
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2
|
98
|
August 20, 2024
|
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Tree topology different than expected
|
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0
|
38
|
August 16, 2024
|
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Resource for representative nucleotide changes for Nextstrain clades
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1
|
59
|
August 2, 2024
|
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Titer measurement of seasonal influenza
|
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2
|
377
|
July 17, 2024
|
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NextClade Variant Calling info
|
|
11
|
880
|
June 20, 2024
|
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Ancestral Node date calculations?
|
|
9
|
434
|
May 8, 2024
|
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Configuration of tip box metadata display order
|
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1
|
192
|
April 26, 2024
|
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Extracting discrete transition states
|
|
1
|
410
|
October 5, 2023
|
|
FLU B Victoria reference segments
|
|
2
|
170
|
April 10, 2024
|
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Question about "augur refine"
|
|
1
|
310
|
April 8, 2024
|
|
Validation of auspice/tb.json failed.
|
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0
|
163
|
April 8, 2024
|
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Help with making H3N2 tanglegram figure
|
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4
|
335
|
March 27, 2024
|
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Substitution model used for phylogenetic tree construction for seasonal influenza A H3N2 HA
|
|
2
|
228
|
March 25, 2024
|
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Index url json for Nextclade v3 (datasets)
|
|
1
|
1221
|
February 28, 2024
|
|
Uploading a narrative to a lab group page
|
|
1
|
179
|
February 16, 2024
|
|
Providing Multiple Sequence Alignments with NexStrain Trees
|
|
4
|
450
|
February 13, 2024
|
|
Sequence missing after certain dates
|
|
5
|
264
|
January 16, 2024
|
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Visualization of JSON tree created by Next strain Workflow
|
|
5
|
781
|
December 17, 2023
|
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Is Auspice hover-over information display configurable?
|
|
5
|
342
|
November 19, 2023
|
|
21L(Omicron, BA.2) showing up as B.1.1.529
|
|
1
|
379
|
October 5, 2023
|
|
Request for comments: how do you subsample your data?
|
|
2
|
363
|
October 5, 2023
|
|
SARS-CoV-2 E484K mutation and del 69-70 deletion
|
|
7
|
628
|
July 18, 2023
|
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Differences in clade classification (results folder vs JSON)
|
|
3
|
577
|
May 25, 2023
|
|
[Non-Nextstrain survey] What are the pain points in getting data ready for phylogenomic analysis?
|
|
2
|
316
|
May 19, 2023
|
|
How to interpret the entropy data
|
|
8
|
1810
|
May 4, 2023
|
|
Assigning Clades from SNPs
|
|
1
|
358
|
April 17, 2023
|
|
Nextclade - Dengue
|
|
1
|
450
|
March 23, 2023
|
|
nextStrain for human evolution and human strand/race/ethnicity
|
|
2
|
403
|
March 6, 2023
|
|
Exclusion of forced sequences after augur filter step - seasonalflu build
|
|
4
|
569
|
January 30, 2023
|