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Creating a dataset with parent-child sequence relations from Auspice tree
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7
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409
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March 23, 2023
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How add RBD immune escape score and ACE2 affinity score in the phylogenetics tree
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1
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555
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March 14, 2023
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UnicodeDecodeError: 'utf-8' codec can't decode byte 0xa0 in position 1252: invalid start byte
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2
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1945
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March 10, 2023
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nextStrain for human evolution and human strand/race/ethnicity
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2
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349
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March 6, 2023
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Error in rule align: argument '--jobs'
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7
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458
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February 28, 2023
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Augur not found despite having installed Nextstrain CLI
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2
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363
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February 27, 2023
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How to add branch labels from node data
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1
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473
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February 23, 2023
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Migration matrix
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1
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326
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February 22, 2023
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Discrepancy between Usher and Nextclade lineage calls for mpox
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1
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354
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February 21, 2023
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Ancestral sequences
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2
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359
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February 16, 2023
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Make Auspice entropy panel show mutations with respect to arbitrary sequence (reference) rather than (reconstructed) root of the tree
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2
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402
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February 15, 2023
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Yearly time scale in newick files & leap years
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1
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294
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February 15, 2023
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Singularity Image
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6
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779
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February 14, 2023
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Custom newick to JSON
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8
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1014
|
February 8, 2023
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Exclusion of forced sequences after augur filter step - seasonalflu build
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4
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506
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January 30, 2023
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Downloading newick versions programatically
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4
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369
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January 27, 2023
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Sites to ignore for Omicron tree building
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0
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377
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January 26, 2023
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Samples in json vs newick files, & branch lengths
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2
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367
|
January 24, 2023
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Source documents defining all the influenza clades
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0
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350
|
January 21, 2023
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Augur refine for mpox which has varying evolutionary rate
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0
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294
|
January 20, 2023
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Advanced Gene Viewing Options
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1
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329
|
January 19, 2023
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How can I download COVID genome data as a single file?
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1
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367
|
January 18, 2023
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Options for Viewing Genotype
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0
|
329
|
January 18, 2023
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Is the default IQtree parameter usually good enough?
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0
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371
|
January 17, 2023
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Auspice view fails to load the datasets
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2
|
341
|
January 16, 2023
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Nextclade cli - shortcuts to get just seqName and Nextclade_pango for all recent GISAID samples
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7
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498
|
January 14, 2023
|
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seqName format different between GISAID FASTA All sequences package vs search results
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2
|
373
|
January 14, 2023
|
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IndexError: too many indices for array: array is 1-dimensional, but 2 were indexed
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3
|
2075
|
December 23, 2022
|
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Conda environment error
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6
|
497
|
December 19, 2022
|
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Broken workflow after updating runtime and CLI
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3
|
412
|
December 15, 2022
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