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Displaying trees from NCBI Pathogen Browser in auspice.us
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9
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559
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January 18, 2024
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Sequence missing after certain dates
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5
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217
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January 16, 2024
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Understanding RSV clade assignment
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4
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358
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January 12, 2024
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Alignments in Nextstrain
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2
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305
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January 12, 2024
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How to combine multiple .json files in a single auspice view?
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9
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292
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January 2, 2024
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Accession in sequences.fasta, but not in nexstrain website
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2
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231
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December 20, 2023
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Analysing only Spike gene sequences from SARS-CoV-2
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1
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291
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December 19, 2023
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Does the rate estimate include a 95% confidence interval?
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1
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364
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December 19, 2023
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Fixing the clock rate when refining an H3N2 phylogenetic tree?
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1
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334
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December 19, 2023
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ERROR: 300 or more distinct discrete states found
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1
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271
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December 19, 2023
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Subsampling Local DENV dataset based on genetic similarity
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1
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271
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December 19, 2023
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How to viz flu vaccine strain as the nextstrain seasonal flu page
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1
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326
|
December 19, 2023
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Refine without an alignment
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2
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197
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December 18, 2023
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Visualization of JSON tree created by Next strain Workflow
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5
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594
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December 17, 2023
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How to download avian influenza fasta and metadata files from GISAID or GenBank in a compatible format?
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1
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500
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December 15, 2023
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Auspice tanglegrams with more than 2 trees?
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2
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226
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December 1, 2023
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Is Auspice hover-over information display configurable?
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5
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288
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November 19, 2023
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Augur traits values null
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2
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276
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November 16, 2023
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Augur TreeTime error
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6
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421
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October 12, 2023
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21L(Omicron, BA.2) showing up as B.1.1.529
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1
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364
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October 5, 2023
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How to use Nextstrain seasonal flu graph as reference tree for Nextclade?
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1
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527
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October 5, 2023
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Change substitution model in SARS-CoV-2 workflow?
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4
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425
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October 5, 2023
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Request for comments: how do you subsample your data?
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2
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339
|
October 5, 2023
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Repeated runs of the same data will give different results
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6
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467
|
September 4, 2023
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How to export trees viewed in auspice as images?
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9
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575
|
September 1, 2023
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Clade Labeling forces AA Mut-file although stated otherwise
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2
|
338
|
August 21, 2023
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Pandas error during augur filter: 'NoneType' object has no attribute 'str'
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8
|
838
|
August 16, 2023
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Clade difference between influenza HA references
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1
|
555
|
August 10, 2023
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Error message when running Zika tutorial workflow
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9
|
575
|
July 17, 2023
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SARS-CoV-2 E484K mutation and del 69-70 deletion
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7
|
553
|
July 18, 2023
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