|
Nextclade cli - shortcuts to get just seqName and Nextclade_pango for all recent GISAID samples
|
|
7
|
490
|
January 14, 2023
|
|
seqName format different between GISAID FASTA All sequences package vs search results
|
|
2
|
370
|
January 14, 2023
|
|
Broken workflow after updating runtime and CLI
|
|
3
|
396
|
December 15, 2022
|
|
Some African Countries (Burkina Faso, Sierra Leone) Build failed
|
|
2
|
360
|
December 12, 2022
|
|
My analysis dont show me the especific location that i expect
|
|
2
|
399
|
November 21, 2022
|
|
Zero value for coloring in nextstrain
|
|
5
|
383
|
November 17, 2022
|
|
How do I build a reference genome
|
|
0
|
343
|
November 14, 2022
|
|
Incorperating `argur distance` outputs
|
|
4
|
409
|
November 8, 2022
|
|
Color in emerging lineages
|
|
2
|
450
|
October 25, 2022
|
|
Why do my sequences end up in excluded_by_diagnostics.txt?
|
|
3
|
734
|
October 18, 2022
|
|
Nextclade cli newbie error (windows): Found argument '--input-dataset' which wasn't expected
|
|
2
|
538
|
October 15, 2022
|
|
Is there any way to locally view the result like clades.nextstrain.org?
|
|
8
|
700
|
September 20, 2022
|
|
Where can I look up clade defining mutations for seasonal flu?
|
|
0
|
404
|
August 31, 2022
|
|
Obtain numerical values on the transmission between countries
|
|
3
|
469
|
September 6, 2022
|
|
Error in jobid: 22
|
|
0
|
335
|
September 5, 2022
|
|
How to visualize result
|
|
1
|
425
|
September 1, 2022
|
|
Error: Alignment must have at least 3 sequences
|
|
3
|
938
|
August 31, 2022
|
|
Increase weight or colors of transmission lines
|
|
1
|
372
|
August 4, 2022
|
|
Getting node support values in the ncov workflow
|
|
2
|
537
|
August 4, 2022
|
|
How to specify what metadata is shown in sample details
|
|
2
|
352
|
July 27, 2022
|
|
Unable to view data on auspice
|
|
4
|
609
|
July 26, 2022
|
|
Spaces in full paths causing problems?
|
|
3
|
489
|
July 25, 2022
|
|
Way to turn off filters?
|
|
4
|
456
|
July 19, 2022
|
|
Why does global data for Mexico capture less samples than continental but has a more recent sample than continental [updated]?
|
|
0
|
312
|
July 15, 2022
|
|
SARS-CoV-2 Sequences from Wastewater sample
|
|
2
|
384
|
July 14, 2022
|
|
Error trying to run ncov-tutorial: nextalign2, sanitize_sequences.py
|
|
6
|
465
|
July 1, 2022
|
|
Is there a way to keep the oldest sample among identical sequences?
|
|
4
|
455
|
June 30, 2022
|
|
Augur tree error from numpy need help to fix
|
|
1
|
448
|
June 30, 2022
|
|
Example data results in different phylogeny compared to nextstrain homepage
|
|
1
|
316
|
June 30, 2022
|
|
Split dataset based on timeframe
|
|
1
|
282
|
June 30, 2022
|