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Why the zika tree doesn't include African genotype?
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0
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31
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August 13, 2025
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The pipeline takes a very long time to complete
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14
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153
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August 11, 2025
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Chikungunya Virus, 250 years old?
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3
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101
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August 10, 2025
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How can I know what columns will be in nextclade output?
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11
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136
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August 5, 2025
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Updated Runtime - unable to update CLI and view results
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3
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55
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August 4, 2025
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Negative Dates in Auspice Timeline When Using YY-XX-XX Format
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1
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52
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August 4, 2025
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Inconsistent QC Results Between Nextclade CLI and Web Version
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2
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61
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August 4, 2025
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Phylogenetic tree and map of plant viruses
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1
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76
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July 30, 2025
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How to display the distribution of lineages on a world map in auspice using the nextstrain build pipeline?
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3
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75
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July 30, 2025
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Use the pre-built phylogenetic trees for further analysis
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0
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53
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July 8, 2025
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H1N1 pdm09 tree - EPI ISL identifiers
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1
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55
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June 26, 2025
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Strain ID and the tab-delimited metadata in Prepare the Sequences
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4
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115
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June 23, 2025
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Need new reference sequences for SARS-CoV2?
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1
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69
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June 15, 2025
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RSV-A Reference Sequence Question
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2
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70
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June 13, 2025
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Sequecing data for Africa-Nigeria-Bayelsa
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0
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37
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June 11, 2025
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How to use criteria to use data from database (Genbank & GISAID)
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0
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51
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June 11, 2025
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Data displayed on nexstrain.org vs downloadable data
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2
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61
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June 5, 2025
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How can one identify host-adaptive/associated mutations from a tree?
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0
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45
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May 25, 2025
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Mapbox display issue (api changing without building auspice)
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3
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76
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May 12, 2025
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Output all amino acids per CDS using Nextclade
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2
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66
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May 7, 2025
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Downloading mpox fasta files
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1
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39
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April 17, 2025
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How do I install additional packages in the nextstrain conda environment?
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2
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86
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April 17, 2025
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Customizing Colors in Nextstrain SARS-CoV-2 Temporal Phylogenetic Tree for Enhanced Analysis
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5
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131
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March 31, 2025
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SARS-CoV-2 new lineage BA.3.2 still not in nightly.json
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2
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192
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March 29, 2025
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Are there any other groups working on Orthonairovirus haemorrhagiae typing
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0
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45
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March 27, 2025
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Tree visualization issue with num_date
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1
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57
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March 24, 2025
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Serving Asupice with NGINX
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6
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121
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March 24, 2025
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File traitsdivision.mugration_model
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4
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608
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March 21, 2025
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Using influenza datasets in clades.nextstrain.org
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7
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202
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March 20, 2025
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How to map SARS-COV-2 Clades to WHO name?
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1
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43
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March 15, 2025
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