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New clade/lineage/sublineage criteria for mpox
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3
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55
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January 15, 2025
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Nextclade CLI error - Alignment matrix size exceeds maximum value
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2
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37
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January 14, 2025
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Nextclade H5N1 Concatenated view B3.13 and D1.1 genotypes
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3
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257
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January 10, 2025
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Aligned nucleotide sequence does not match the CDS translation
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1
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41
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January 9, 2025
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Displaying a Map in Auspice
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5
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461
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January 5, 2025
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New version rule align error
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2
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29
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December 29, 2024
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I want to make a phylogenetic tree using augur and auspice pipeline that analyzes the transmission of SARS-CoV-2 from the global context into the Philippines
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0
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19
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December 28, 2024
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Timing of nightly build
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2
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27
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December 24, 2024
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Frequency map problem
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2
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17
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December 20, 2024
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IDs of early delta-like strains
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0
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18
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November 25, 2024
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Problems with coordinate binding
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2
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21
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November 23, 2024
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Nextstrain files/datasets in Google Cloud (GCP)?
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3
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30
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November 22, 2024
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Load json fails when change dataset on nextstrain
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1
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15
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November 20, 2024
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`nextclade sort` Using a serverless local dataset for sorting
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2
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32
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November 20, 2024
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Error: Alignment must have at least 3 sequences
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9
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1038
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November 7, 2024
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Nextstrain phylogenetic tree in the format used by UCSC
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8
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106
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November 6, 2024
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Iqtree error: Tree taxa and alignment sequence do not match
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10
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235
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November 6, 2024
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Web App and Nextclade (Pango)
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1
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45
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November 1, 2024
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Fix_tree.py error for mpox trees
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3
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40
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October 28, 2024
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RSV-A lineage reference sequences have discordant clade assignments
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3
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57
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October 27, 2024
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Nextstrain Installation
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8
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97
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October 22, 2024
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Question about frequency values in builds files
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3
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33
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October 15, 2024
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How to type RSV clades
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3
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65
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October 9, 2024
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Nextclade set of possible lineages or distance metric
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2
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44
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October 6, 2024
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Next Strain Q/A
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0
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44
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July 31, 2024
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Are gaps due to true insertions ok to leave in the alignment?
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1
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44
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August 20, 2024
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View in NextClade Feature
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0
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19
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September 20, 2024
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Comparable mutation metrics?
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1
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48
|
September 18, 2024
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Tree shows an X at the end of branches... what do they mean?
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2
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57
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July 22, 2024
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Difference between sequence samples based on Dataset
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1
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34
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September 16, 2024
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