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Download and rename all builds from nextstrain.org/groups
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5
|
33
|
August 1, 2024
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Titer measurement formats and conversion to csv for nextflu
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3
|
26
|
July 30, 2024
|
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Confirming presence of amino acid that matches the reference sequence
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0
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24
|
July 30, 2024
|
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Mpox: nextstrain issue
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2
|
52
|
July 20, 2024
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Measles root sequence
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1
|
20
|
July 19, 2024
|
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How to change the reference sequence?
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2
|
31
|
July 18, 2024
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Titer measurement of seasonal influenza
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2
|
353
|
July 17, 2024
|
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Geography: will augur recognize correct region if the correct country is provided?
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1
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24
|
July 13, 2024
|
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Lost the tip names (labels)
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2
|
33
|
July 11, 2024
|
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Samples have missing collection date and country info
|
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2
|
166
|
July 10, 2024
|
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S3 or URL links for workflow data
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6
|
90
|
July 3, 2024
|
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Ingest workflow: NCBI Datasets, Entrez, or something else?
|
|
1
|
95
|
June 28, 2024
|
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NextClade Variant Calling info
|
|
11
|
798
|
June 20, 2024
|
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Reference tree for RSV used in NextClade webstie
|
|
3
|
186
|
June 19, 2024
|
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How can I know the Nextclade_pango for each of SC2 sequences?
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4
|
1002
|
June 15, 2024
|
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Question about mafft alignment using a reference sequence
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2
|
312
|
June 14, 2024
|
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Selection of RSV reference sequences
|
|
2
|
196
|
May 23, 2024
|
|
Need help installing local instance of Nextclade web
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|
3
|
146
|
May 21, 2024
|
|
Geo resolution had no demes
|
|
4
|
162
|
May 10, 2024
|
|
Having issues installing on macOS
|
|
1
|
150
|
May 10, 2024
|
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Ancestral Node date calculations?
|
|
9
|
344
|
May 8, 2024
|
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Remove map background
|
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3
|
206
|
May 3, 2024
|
|
Configuration of tip box metadata display order
|
|
1
|
173
|
April 26, 2024
|
|
Problems for the SARS-CoV-2 Workflow
|
|
1
|
428
|
May 19, 2023
|
|
Extracting discrete transition states
|
|
1
|
384
|
October 5, 2023
|
|
Question about augur filter
|
|
5
|
283
|
April 23, 2024
|
|
Problem with Influenza H5N1 tanglegram
|
|
2
|
188
|
April 19, 2024
|
|
Guide to filtering GISAID data for division-specific SARS-CoV-2 builds
|
|
3
|
1501
|
April 17, 2024
|
|
Inferring pathogen.json from a nextclade.tsv results
|
|
0
|
136
|
April 16, 2024
|
|
When Nextclade CLI calls clades but Nextclade Web does not
|
|
0
|
135
|
April 16, 2024
|