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How can one identify host-adaptive/associated mutations from a tree?
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0
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23
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May 25, 2025
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How to map SARS-COV-2 Clades to WHO name?
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1
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16
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March 15, 2025
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Annotation error for aa translation
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2
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28
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February 3, 2025
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Aligned nucleotide sequence does not match the CDS translation
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1
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41
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January 9, 2025
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Frequency map problem
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2
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17
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December 20, 2024
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`nextclade sort` Using a serverless local dataset for sorting
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2
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32
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November 20, 2024
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Iqtree error: Tree taxa and alignment sequence do not match
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10
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235
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November 6, 2024
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Reduce number of references in RSV phylogenetic tree - Nextclade CLI
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1
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31
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September 9, 2024
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Methods to automate the list of pangos for augur filter?
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8
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108
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August 27, 2024
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Question about upload protocol for remote upload
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1
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26
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August 20, 2024
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Titer measurement formats and conversion to csv for nextflu
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3
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26
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July 30, 2024
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How to change the reference sequence?
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2
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34
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July 18, 2024
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Lost the tip names (labels)
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2
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35
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July 11, 2024
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Reference tree for RSV used in NextClade webstie
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3
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201
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June 19, 2024
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How can I know the Nextclade_pango for each of SC2 sequences?
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4
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1003
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June 15, 2024
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Question about mafft alignment using a reference sequence
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2
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319
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June 14, 2024
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Selection of RSV reference sequences
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2
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204
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May 23, 2024
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Problems for the SARS-CoV-2 Workflow
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1
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428
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May 19, 2023
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Inferring pathogen.json from a nextclade.tsv results
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0
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137
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April 16, 2024
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When Nextclade CLI calls clades but Nextclade Web does not
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0
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138
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April 16, 2024
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IQTREE error: Some sequences (see above) are problematic, please check your alignment again
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3
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752
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April 11, 2024
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Can't open this page!
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1
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144
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March 12, 2024
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List of clade-like attributes for each organism
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2
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150
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March 9, 2024
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Unable to view zika tutorial
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8
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260
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January 25, 2024
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CLI link broken from clades.nextstrain.org
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3
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225
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January 24, 2024
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Displaying trees from NCBI Pathogen Browser in auspice.us
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9
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561
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January 18, 2024
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Analysing only Spike gene sequences from SARS-CoV-2
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1
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298
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December 19, 2023
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Augur traits values null
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2
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281
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November 16, 2023
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Repeated runs of the same data will give different results
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6
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469
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September 4, 2023
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How to export trees viewed in auspice as images?
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9
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585
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September 1, 2023
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