|
Nextclade short clade annotation H1N1
|
|
1
|
12
|
January 15, 2026
|
|
How to set up next strain
|
|
2
|
12
|
January 8, 2026
|
|
How can one identify host-adaptive/associated mutations from a tree?
|
|
0
|
40
|
May 25, 2025
|
|
How to map SARS-COV-2 Clades to WHO name?
|
|
1
|
36
|
March 15, 2025
|
|
Annotation error for aa translation
|
|
2
|
52
|
February 3, 2025
|
|
Aligned nucleotide sequence does not match the CDS translation
|
|
1
|
62
|
January 9, 2025
|
|
Frequency map problem
|
|
2
|
46
|
December 20, 2024
|
|
`nextclade sort` Using a serverless local dataset for sorting
|
|
2
|
76
|
November 20, 2024
|
|
Iqtree error: Tree taxa and alignment sequence do not match
|
|
10
|
374
|
November 6, 2024
|
|
Reduce number of references in RSV phylogenetic tree - Nextclade CLI
|
|
1
|
51
|
September 9, 2024
|
|
Methods to automate the list of pangos for augur filter?
|
|
8
|
137
|
August 27, 2024
|
|
Question about upload protocol for remote upload
|
|
1
|
49
|
August 20, 2024
|
|
Titer measurement formats and conversion to csv for nextflu
|
|
3
|
55
|
July 30, 2024
|
|
How to change the reference sequence?
|
|
2
|
59
|
July 18, 2024
|
|
Lost the tip names (labels)
|
|
2
|
60
|
July 11, 2024
|
|
Reference tree for RSV used in NextClade webstie
|
|
3
|
241
|
June 19, 2024
|
|
How can I know the Nextclade_pango for each of SC2 sequences?
|
|
4
|
1037
|
June 15, 2024
|
|
Question about mafft alignment using a reference sequence
|
|
2
|
341
|
June 14, 2024
|
|
Selection of RSV reference sequences
|
|
2
|
250
|
May 23, 2024
|
|
Problems for the SARS-CoV-2 Workflow
|
|
1
|
438
|
May 19, 2023
|
|
Inferring pathogen.json from a nextclade.tsv results
|
|
0
|
154
|
April 16, 2024
|
|
When Nextclade CLI calls clades but Nextclade Web does not
|
|
0
|
156
|
April 16, 2024
|
|
IQTREE error: Some sequences (see above) are problematic, please check your alignment again
|
|
3
|
889
|
April 11, 2024
|
|
Can't open this page!
|
|
1
|
165
|
March 12, 2024
|
|
List of clade-like attributes for each organism
|
|
2
|
167
|
March 9, 2024
|
|
Unable to view zika tutorial
|
|
8
|
324
|
January 25, 2024
|
|
CLI link broken from clades.nextstrain.org
|
|
3
|
267
|
January 24, 2024
|
|
Displaying trees from NCBI Pathogen Browser in auspice.us
|
|
9
|
575
|
January 18, 2024
|
|
Analysing only Spike gene sequences from SARS-CoV-2
|
|
1
|
331
|
December 19, 2023
|
|
Augur traits values null
|
|
2
|
309
|
November 16, 2023
|