|
Zika-tutorial, NO /snp/bin/docker
|
|
4
|
427
|
July 27, 2021
|
|
Individual strain tracking
|
|
0
|
322
|
July 26, 2021
|
|
Is it possible to supply multiple inputs as a list of strain names?
|
|
2
|
367
|
July 14, 2021
|
|
The 'conda' command is not available in the shell /bin/bash that will be used by Snakemake
|
|
1
|
357
|
July 14, 2021
|
|
Error in augur for Nextstrain installation in MmacOS High Sierra v10.13.6
|
|
2
|
500
|
July 14, 2021
|
|
Nextmeta and nextfasta not on GISAID
|
|
34
|
2640
|
June 30, 2021
|
|
Migrating from nextclade 0.* to 1.* for CLI use
|
|
0
|
381
|
June 24, 2021
|
|
Create nextstrain
|
|
1
|
343
|
June 18, 2021
|
|
Unsupporting rooting mechanisms or root not found
|
|
2
|
981
|
June 15, 2021
|
|
Date confidence, ORF1a of Sarbecovirus, 104 genomes
|
|
2
|
360
|
June 10, 2021
|
|
Tutorial, different instructions
|
|
1
|
400
|
May 24, 2021
|
|
1 fundamental (maybe naive) question on nextStrain
|
|
1
|
419
|
May 19, 2021
|
|
Nextalign | Error: Invalid nucleotide: "L"
|
|
1
|
348
|
May 18, 2021
|
|
Snakefile not found
|
|
6
|
2544
|
May 3, 2021
|
|
Identify a SARS-CoV2 strain
|
|
2
|
454
|
April 14, 2021
|
|
Frequency plot smoothing
|
|
3
|
573
|
April 14, 2021
|
|
Error in augur,
|
|
1
|
651
|
April 5, 2021
|
|
Intervals in frequency panels
|
|
3
|
435
|
March 31, 2021
|
|
Obtain auspice phylogenetic tree in journal format
|
|
2
|
453
|
March 31, 2021
|
|
Artifactual genomes/nodes
|
|
4
|
392
|
March 29, 2021
|
|
Deciding on thresholds for calling consensus sequence
|
|
2
|
587
|
March 21, 2021
|
|
Augur clades didn't work
|
|
2
|
378
|
March 17, 2021
|
|
300 or more distinct discrete states found in ancestral reconstruction
|
|
4
|
689
|
March 13, 2021
|
|
Help needed to bulid Pylogenetic analysis for viruses
|
|
2
|
415
|
March 8, 2021
|
|
From a newbie: difficulty finding multiple coincident mutations in spike
|
|
1
|
378
|
March 8, 2021
|
|
Samples identified as belonging to a parent clade
|
|
2
|
489
|
March 6, 2021
|
|
Too high divergence
|
|
4
|
589
|
February 28, 2021
|
|
Nextalign + Snakemake
|
|
3
|
477
|
February 23, 2021
|
|
Sampling of influenza sequences
|
|
1
|
429
|
February 23, 2021
|
|
How to look at data from each country?
|
|
4
|
772
|
February 23, 2021
|